Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_B20
         (500 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41536-4|AAK39238.2|  419|Caenorhabditis elegans Defective fasci...    28   3.3  
AL110485-3|CAB60351.1| 2145|Caenorhabditis elegans Hypothetical ...    28   3.3  
AF176087-1|AAD55066.1|  419|Caenorhabditis elegans nuclear hormo...    28   3.3  
U39471-1|AAA80132.4|  461|Caenorhabditis elegans Intestinal acid...    28   4.4  
Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical pr...    27   5.8  
U58760-4|AAK31462.2|  678|Caenorhabditis elegans Hypothetical pr...    27   5.8  

>U41536-4|AAK39238.2|  419|Caenorhabditis elegans Defective
           fasciculation of axonsprotein 1 protein.
          Length = 419

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = +3

Query: 282 RCLSKLMNRHRLRSQRRPQAVRTSLPPRTLEASN*YLTAGG*VTVQTFPLCMIKR 446
           +CL+K MN+  ++++R+P+   T  P   ++  N +    G V+       M+KR
Sbjct: 162 KCLNKGMNKDAVQNERQPRNTATIRPALDMDPQNFFREYAGAVSAIMGHSNMMKR 216


>AL110485-3|CAB60351.1| 2145|Caenorhabditis elegans Hypothetical
           protein Y46G5A.4 protein.
          Length = 2145

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 212 QQKLQLSDSYLPVAMQVISHLTDQMSFEV 298
           Q  L L +  LPV  Q++S LTD ++ EV
Sbjct: 870 QYYLSLMNQQLPVESQMVSRLTDMLNAEV 898


>AF176087-1|AAD55066.1|  419|Caenorhabditis elegans nuclear hormone
           receptor FAX-1 protein.
          Length = 419

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = +3

Query: 282 RCLSKLMNRHRLRSQRRPQAVRTSLPPRTLEASN*YLTAGG*VTVQTFPLCMIKR 446
           +CL+K MN+  ++++R+P+   T  P   ++  N +    G V+       M+KR
Sbjct: 162 KCLNKGMNKDAVQNERQPRNTATIRPALDMDPQNFFREYAGAVSAIMGHSNMMKR 216


>U39471-1|AAA80132.4|  461|Caenorhabditis elegans Intestinal acid
           phosphatase protein4 protein.
          Length = 461

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 107 PIYFLRLYQQNKDMIRATFLLLFLQVFYRNG 199
           PI+ ++L   N D++  T  L+ +Q  +R+G
Sbjct: 9   PIFLVQLVVSNADVMNGTMKLMMVQAIWRHG 39


>Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical
           protein D1046.4 protein.
          Length = 583

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = +1

Query: 43  ITVSIFKKTFLLNKHLACGVFSDLFFTSLSTE*RHDSRYLSAVISTSV---L*KWSTFSA 213
           +  +++  T L+N  + C   S+   +++     +D   L   I+TS+      W TFS+
Sbjct: 43  LNATVYSNTILINFSVIC--MSEEKISTMFNGSHNDYEVLREAIATSMNDFRSIWFTFSS 100

Query: 214 TKAATLRLLSPCG 252
            K + + ++SP G
Sbjct: 101 IKQSIMFMMSPLG 113


>U58760-4|AAK31462.2|  678|Caenorhabditis elegans Hypothetical
           protein C27A2.4 protein.
          Length = 678

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 116 NKSEKTPHARCLFNKNVFLNIETV 45
           NK+++ P+ R L+ KNV    ETV
Sbjct: 576 NKTDEKPYFRVLYQKNVHSTFETV 599


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,506,061
Number of Sequences: 27780
Number of extensions: 231391
Number of successful extensions: 708
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)