Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_B20
(500 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.4
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.4
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.4
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.4
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.4
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 2.4
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 2.4
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 22 3.1
DQ244074-1|ABB36784.1| 517|Apis mellifera cytochrome P450 monoo... 21 5.5
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 21 7.2
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.5
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.6 bits (46), Expect = 2.4
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +2
Query: 362 PYIGSFQLIPNGWWMSYSTNISALHDQTTPYHKPGLY 472
P I + G+ +Y T++ HD + Y PG++
Sbjct: 71 PDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIF 107
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.6 bits (46), Expect = 2.4
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +2
Query: 362 PYIGSFQLIPNGWWMSYSTNISALHDQTTPYHKPGLY 472
P I + G+ +Y T++ HD + Y PG++
Sbjct: 71 PDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIF 107
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.6 bits (46), Expect = 2.4
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +2
Query: 362 PYIGSFQLIPNGWWMSYSTNISALHDQTTPYHKPGLY 472
P I + G+ +Y T++ HD + Y PG++
Sbjct: 71 PDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIF 107
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.6 bits (46), Expect = 2.4
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +2
Query: 362 PYIGSFQLIPNGWWMSYSTNISALHDQTTPYHKPGLY 472
P I + G+ +Y T++ HD + Y PG++
Sbjct: 71 PDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIF 107
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.6 bits (46), Expect = 2.4
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +2
Query: 362 PYIGSFQLIPNGWWMSYSTNISALHDQTTPYHKPGLY 472
P I + G+ +Y T++ HD + Y PG++
Sbjct: 71 PDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIF 107
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 2.4
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +2
Query: 362 PYIGSFQLIPNGWWMSYSTNISALHDQTTPYHKPGLY 472
P I + G+ +Y TN+ H+ + Y PG++
Sbjct: 139 PDILMYNSADEGFDGTYQTNVVVTHNGSCLYVPPGIF 175
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 2.4
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +2
Query: 362 PYIGSFQLIPNGWWMSYSTNISALHDQTTPYHKPGLY 472
P I + G+ +Y TN+ H+ + Y PG++
Sbjct: 139 PDILMYNSADEGFDGTYQTNVVVTHNGSCLYVPPGIF 175
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 22.2 bits (45), Expect = 3.1
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +2
Query: 254 MQVISHLTDQMSFEVD 301
M+ +SH TD+M F+ D
Sbjct: 181 MESLSHTTDEMIFQWD 196
>DQ244074-1|ABB36784.1| 517|Apis mellifera cytochrome P450
monooxygenase protein.
Length = 517
Score = 21.4 bits (43), Expect = 5.5
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = +1
Query: 325 NVDHKQSVRHYLPVHWKLPT 384
N ++ + + YLP W PT
Sbjct: 429 NEENFKDAKKYLPERWTTPT 448
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 21.0 bits (42), Expect = 7.2
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +3
Query: 150 FALPFCCYFYKCFIEM 197
FAL CC F C EM
Sbjct: 744 FALCHCCDFDACDCEM 759
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.5
Identities = 9/37 (24%), Positives = 18/37 (48%)
Frame = +2
Query: 362 PYIGSFQLIPNGWWMSYSTNISALHDQTTPYHKPGLY 472
P I + G+ +Y T++ H+ + Y PG++
Sbjct: 71 PDILMYNSADEGFDGTYQTSVVVTHNGSCLYVPPGIF 107
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,689
Number of Sequences: 438
Number of extensions: 2721
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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