Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_B19
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    23   2.2  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    23   2.2  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    21   5.0  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   6.6  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   8.7  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   8.7  

>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +1

Query: 334 GRPPRYDSACNGDSGS-GLVDDTGRLIGVAS 423
           G+PP    + NGD G+    D T    G ++
Sbjct: 39  GKPPELTGSTNGDGGARSNADSTSHTDGAST 69


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +1

Query: 334 GRPPRYDSACNGDSGS-GLVDDTGRLIGVAS 423
           G+PP    + NGD G+    D T    G ++
Sbjct: 195 GKPPELTGSTNGDGGARSNADSTSHTDGAST 225


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 13/45 (28%), Positives = 17/45 (37%)
 Frame = +1

Query: 232 TMRSQMHAMELTTQSNEVCSTLEQYTPEDMLCVKGRPPRYDSACN 366
           T  S+      TTQ  +   T E     D +C K    R  S C+
Sbjct: 412 TQASEQPTESSTTQKPQTTKTPESGNESDGVCTKEGIVRDPSDCS 456


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 280  EVCSTLEQYTPEDMLCVKGRPPRYDSACNGDSGSGLVDDT 399
            ++  T+E+YT E +LC   R   Y  A N   G+G   DT
Sbjct: 1444 QIGPTVEKYTLEKLLC-GTRYQVYAKAYN-SIGTGDPSDT 1481


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = +2

Query: 197 HMLATVPVITEVLCAVRCTQWN*RPSPMKCVPL 295
           H+   +PV++   C++ C      P P   V L
Sbjct: 69  HIKGAIPVVSLSTCSMLCGSTQLWPQPTGPVTL 101


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 5/19 (26%), Positives = 12/19 (63%)
 Frame = -3

Query: 96  EVPFCSYLFNVELISIKPI 40
           E+P+C  +FN+    ++ +
Sbjct: 386 EIPYCGKIFNLTTRQVRTL 404


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,630
Number of Sequences: 336
Number of extensions: 2531
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)