Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_B19
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   0.73 
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    27   2.2  
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr...    26   3.9  

>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
 Frame = +1

Query: 295 LEQYTPEDMLCVKGRPPRYDSACNGDSGSGLVDDT----GRLIGVASWV 429
           L+ + P     +KG P +Y  +C      GL+ DT    G L  +  WV
Sbjct: 242 LDSFLPGTTQAIKGYPTQYFGSCFKQLSEGLIFDTPGYRGNLKSLLPWV 290


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 235 MRSQMHAMELTTQSNEVCSTLEQYTPEDMLCVKGRPP 345
           M   MHA+  +   + + ST E Y P+  L + G  P
Sbjct: 25  MEKTMHALPSSLLDSPLLSTNEHYPPKSTLLLSGPSP 61


>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 382

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -1

Query: 218 LAP*PAYATSKPTGRLSWSS 159
           LAP P+Y+TS+PT  +SW +
Sbjct: 303 LAPPPSYSTSQPT--ISWDA 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,115,953
Number of Sequences: 5004
Number of extensions: 41147
Number of successful extensions: 60
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)