Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_B19
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1466 - 33799104-33799229,33799659-33799669,33800052-338002...    27   6.9  
03_02_0039 - 5213699-5214775,5214815-5215093,5215300-5215776,521...    27   6.9  
10_01_0008 - 89397-90404,90496-90572,91412-91511                       27   9.1  
09_01_0080 - 1168032-1168046,1168374-1168431,1168516-1168631,116...    27   9.1  

>04_04_1466 -
           33799104-33799229,33799659-33799669,33800052-33800200,
           33800261-33800299,33800690-33800746,33800839-33801628,
           33801705-33801980,33802051-33802117,33802211-33802285,
           33802618-33802812,33802927-33803076,33803152-33803522,
           33804070-33804193,33804246-33804275,33804306-33804417,
           33804919-33804985,33805138-33805180,33805768-33805872
          Length = 928

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +1

Query: 328 VKGRPPRYDSACNGDSGSGLVDDTGRLIGVASWVQNDA-IECKNGNIVVFSRVSS 489
           V  +P    SA + D G+GL    G L+G+AS+  +D   E  N + V  S +SS
Sbjct: 474 VPAKPTNVSSADHSD-GTGLSSPKGALLGLASYDSDDEDDEGDNEDKVPVSNLSS 527


>03_02_0039 -
           5213699-5214775,5214815-5215093,5215300-5215776,
           5216073-5216438
          Length = 732

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 21/60 (35%), Positives = 28/60 (46%)
 Frame = -2

Query: 214 HRSQHMQRLSPQEG*VGHPTLRLPLSSRPKVKVRRVLQVRSPILQLPV*CRTHQYQANRV 35
           H S H  RL      V  P L   LSS P  K R +L  R  I +L   C T+  +++R+
Sbjct: 529 HTSPHSDRLGNLFKAVTPPLLDR-LSSTPPAKSRPILAKRCRIARLAEYCSTNPRRSSRL 587


>10_01_0008 - 89397-90404,90496-90572,91412-91511
          Length = 394

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 391 LPARCRCHHYKLSHI*VDDP 332
           LP  CR + Y+LS++  DDP
Sbjct: 244 LPVECRDNGYRLSYLWADDP 263


>09_01_0080 -
           1168032-1168046,1168374-1168431,1168516-1168631,
           1169310-1169368,1169832-1169880,1170314-1170378,
           1170477-1170564,1171212-1171277
          Length = 171

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +1

Query: 373 SGSGLVDDTGRLIGVAS 423
           SG  +VDDTG+L+GV S
Sbjct: 62  SGFPVVDDTGKLVGVVS 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,425,730
Number of Sequences: 37544
Number of extensions: 302038
Number of successful extensions: 617
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)