Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_B18
         (420 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8IBP1 Cluster: Putative uncharacterized protein PF07_0...    33   2.4  
UniRef50_A4ZHD9 Cluster: NADH dehydrogenase subunit 6; n=5; Oomy...    33   3.1  

>UniRef50_Q8IBP1 Cluster: Putative uncharacterized protein PF07_0086;
            n=1; Plasmodium falciparum 3D7|Rep: Putative
            uncharacterized protein PF07_0086 - Plasmodium falciparum
            (isolate 3D7)
          Length = 3429

 Score = 33.1 bits (72), Expect = 2.4
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = +3

Query: 246  YHKNKTLVKNI*K-CMYY*VIKRYRQMCI*KL--FVSDNDIKKYFKKQQLTDHYYY 404
            YH  K L+ NI K  +++   K+Y  +C+     F   N + +Y+KK +L D Y Y
Sbjct: 2623 YHNKKELILNIMKYILFFSCTKKYTNVCLLLFDYFGYYNVVIQYYKKYKLNDLYEY 2678


>UniRef50_A4ZHD9 Cluster: NADH dehydrogenase subunit 6; n=5;
           Oomycetes|Rep: NADH dehydrogenase subunit 6 -
           Phytophthora ramorum (Sudden oak death agent)
          Length = 236

 Score = 32.7 bits (71), Expect = 3.1
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -1

Query: 405 NNNNGQLTVVF*NTSLYHYLKRIVFKYTFACIF*LLNNTCIFKYFSPVFYFYD 247
           NNN G L ++F  + ++     I+F   F   + L+NN+   K  + +F+F D
Sbjct: 89  NNNLGYLPIIFLISFIFFLETFIMFSKVFTSYYHLINNSFFNKEVNTLFFFKD 141


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 323,429,084
Number of Sequences: 1657284
Number of extensions: 5380433
Number of successful extensions: 8905
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8885
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 19389441554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)