Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_B18
         (420 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ...    26   2.1  
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ...    26   2.1  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    25   4.8  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    25   4.8  

>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 546

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 314 VSFDYLIIHAFLNIFHQCFIFMILHET 234
           + F Y  I A  N+   C IF+  HET
Sbjct: 429 IGFKYGYIFAACNLCAACIIFLFAHET 455


>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 314 VSFDYLIIHAFLNIFHQCFIFMILHET 234
           + F Y  I A  N+   C IF+  HET
Sbjct: 429 IGFKYGYIFAACNLCAACIIFLFAHET 455


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -3

Query: 166 MKQMQFNYIVQSEPRKPLALHLXXXXXXXXSMLVLYALLNYSSDYD 29
           +K +Q N + +  PRK L  H+        + L+L  L N   DY+
Sbjct: 661 LKFLQLNPLPELTPRKVLLEHVPLQAIIFQNKLLLRTLENRYEDYE 706


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 399 NNGQLTVVF*NTSLYHYLKRIVFKYT 322
           NN Q   +  N +LY Y  RIV +YT
Sbjct: 172 NNTQFDFLKPNNALYPYFMRIVQQYT 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,461,993
Number of Sequences: 5004
Number of extensions: 24984
Number of successful extensions: 35
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)