Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_B18
         (420 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110478-12|CAM33509.1|  108|Caenorhabditis elegans Hypothetical...    27   4.1  
AL110478-9|CAB54343.2|  113|Caenorhabditis elegans Hypothetical ...    27   4.1  
AC006675-1|AAK84559.1|  334|Caenorhabditis elegans Serpentine re...    27   4.1  
Z81513-3|CAB04185.3|  476|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AF016451-8|AAB66004.2|  354|Caenorhabditis elegans Serpentine re...    27   7.2  
AF125959-3|AAD14731.1|  531|Caenorhabditis elegans Udp-glucurono...    26   9.5  

>AL110478-12|CAM33509.1|  108|Caenorhabditis elegans Hypothetical
           protein Y26D4A.17 protein.
          Length = 108

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 388 VNCCFLKYF-FISLSETNSFQIHICLYLLIT**YMHF 281
           +N  ++ YF F+   E N F + IC+YL+    Y+ F
Sbjct: 49  INQFYILYFSFLRFHELNHFPLIICIYLIFFFEYITF 85


>AL110478-9|CAB54343.2|  113|Caenorhabditis elegans Hypothetical
           protein Y26D4A.5 protein.
          Length = 113

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 388 VNCCFLKYF-FISLSETNSFQIHICLYLLIT**YMHF 281
           +N  ++ YF F+   E N F + IC+YL+    Y+ F
Sbjct: 54  INQFYILYFSFLRFHELNHFPLIICIYLIFFFEYITF 90


>AC006675-1|AAK84559.1|  334|Caenorhabditis elegans Serpentine
           receptor, class h protein33 protein.
          Length = 334

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 296 IIHAFLNIFHQCFIFMILHET*IKDLYL 213
           I+ AF+ +F  C  F +LH T I  LY+
Sbjct: 249 ILQAFIFLFFSCVPFTVLHLTIIFGLYI 276


>Z81513-3|CAB04185.3|  476|Caenorhabditis elegans Hypothetical
           protein F26D2.3a protein.
          Length = 476

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 1   ARGKNTPQFHHNQMNSLEVHRGQAYLIFL 87
           ++G N    H+N M  LE  RG  YL+ L
Sbjct: 200 SKGHNINLAHYNCMKRLEASRGWGYLMLL 228


>AF016451-8|AAB66004.2|  354|Caenorhabditis elegans Serpentine
           receptor, class t protein65 protein.
          Length = 354

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 134 LYDVIKLHLLH*LNYCSVSKFIVNLI*GIDL*FKF 238
           L + I   LL+ LNYC VS+ + +   G+ L F F
Sbjct: 89  LRENISYKLLNLLNYCDVSQAVCHFFTGLFLIFPF 123


>AF125959-3|AAD14731.1|  531|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein14 protein.
          Length = 531

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 357 YHYLKRIVFKYTFACIF*LLNNTCIFKYF 271
           Y+YL  I F   FAC+   L    IFK F
Sbjct: 493 YYYLDIIAFFILFACLALYLFTNLIFKIF 521


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,898,558
Number of Sequences: 27780
Number of extensions: 135442
Number of successful extensions: 280
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)