Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_B17
(485 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce... 233 1e-62
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 30 0.21
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|... 28 0.86
SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha... 27 1.1
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 27 1.5
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 27 2.0
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 25 4.6
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 25 4.6
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 25 8.0
>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 151
Score = 233 bits (570), Expect = 1e-62
Identities = 107/146 (73%), Positives = 123/146 (84%)
Frame = +3
Query: 24 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 203
MGRMH+ GKGI+ SALPY RS P W K AD V EQI K KKG++PSQIGV LRDSHG+
Sbjct: 1 MGRMHSKGKGIASSALPYVRSPPAWCKADADSVVEQILKFSKKGMSPSQIGVTLRDSHGI 60
Query: 204 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 383
QVRF+TG+KI+RI+KA GLAP+LPEDLY LIKKAV++RKHLERNRKDKDSKFRLIL+ES
Sbjct: 61 PQVRFITGQKIMRILKANGLAPELPEDLYNLIKKAVSVRKHLERNRKDKDSKFRLILIES 120
Query: 384 RIHRLARYYKTKSVLPPNWKYESSNS 461
RIHRLARYY+ LPP WKYES+ +
Sbjct: 121 RIHRLARYYRKVGALPPTWKYESATA 146
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 29.9 bits (64), Expect = 0.21
Identities = 20/81 (24%), Positives = 39/81 (48%)
Frame = +3
Query: 210 VRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRI 389
+R KK+ +KA G EDL +L + + + +++K RL ++ RI
Sbjct: 623 IRINEAKKLAEELKAKGGLEVNAEDLEHLDADKLRAMQIEQVEKQNKSMNERLRVIGKRI 682
Query: 390 HRLARYYKTKSVLPPNWKYES 452
L R Y+ +++ P W+ ++
Sbjct: 683 DHLERAYRREAI--PLWEEDA 701
>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 483
Score = 27.9 bits (59), Expect = 0.86
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +3
Query: 321 KHLERNRKDKDSKFRLILVESRIHRLARYYKTKS 422
K+ R +K+ D ++ +LVESR+H L R+ +K+
Sbjct: 32 KYQWREQKESD-EYDYVLVESRLHELRRHRLSKN 64
>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
Caf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 27.5 bits (58), Expect = 1.1
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Frame = +3
Query: 108 TADDVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDL--PE 281
++DD Q + L QIG+ L D G A V T + L D+ PE
Sbjct: 66 SSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPVEACT----WQFNFTFNLQDDMYAPE 121
Query: 282 DLYYLIKKAVAMRKHLE 332
+ L K + +KH E
Sbjct: 122 SIELLTKSGIDFKKHQE 138
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 27.1 bits (57), Expect = 1.5
Identities = 20/71 (28%), Positives = 30/71 (42%)
Frame = +3
Query: 228 KKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARY 407
KKI+ I L D YYL KKA + + N +K+SK I +E + +
Sbjct: 183 KKIIDIFDQFPLLTKKYWD-YYLFKKAFLILEDANLNSFEKNSKLEEIRIEKKSLKQYSP 241
Query: 408 YKTKSVLPPNW 440
+ L +W
Sbjct: 242 VNLEKYLTKSW 252
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 26.6 bits (56), Expect = 2.0
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 98 PGRDTAAVRQRRLGYTLARCVHTTHIGGFLP 6
P R T A R+R L YT ++ H+T + LP
Sbjct: 553 PQRATPASRERVLPYTRSQAFHSTSLPPSLP 583
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.4 bits (53), Expect = 4.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 351 PCPSYYVPNVSSWRQPS*SGSTNLPVDQEQ 262
P PSY+ P S Q +GST L D +Q
Sbjct: 338 PAPSYFSPGSSFGAQLCANGSTLLRADTKQ 367
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 25.4 bits (53), Expect = 4.6
Identities = 10/42 (23%), Positives = 22/42 (52%)
Frame = +3
Query: 225 GKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDK 350
G+ + ++ A + PE+L+ +KK+ + +K + K K
Sbjct: 192 GRTVEKLENATKVEKSAPEELFASLKKSASQKKSAAKESKPK 233
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 24.6 bits (51), Expect = 8.0
Identities = 12/54 (22%), Positives = 26/54 (48%)
Frame = -1
Query: 272 IRSKTHSFHDTQDLFTSNKSDLCNTMRVPEHDTDLGRSKTLFAKFEDLFLNIIS 111
++++ D+ ++ K+ L + + TDLG L F+DL + ++S
Sbjct: 162 VKARYKEISDSLVAVSAEKTQLSEKVEKMKRSTDLGAEAVLPLDFQDLRVALLS 215
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,085,287
Number of Sequences: 5004
Number of extensions: 41405
Number of successful extensions: 129
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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