Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_B17
(485 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0119 - 951492-951679,951780-951918,952023-952095,952196-95... 220 4e-58
07_03_0978 + 23099690-23100108,23100530-23100564,23100868-231009... 198 3e-51
08_01_0120 - 957365-957552,957642-957780,957847-957970,958398-95... 192 1e-49
02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416 145 2e-35
08_02_1332 + 26207164-26207257,26207454-26207530,26207771-262078... 31 0.65
11_06_0295 + 22033367-22034947,22035030-22035137,22035230-220353... 29 1.5
07_03_0776 + 21417476-21417691,21417775-21417855,21417941-214183... 29 2.0
04_04_1209 + 31755637-31755821,31756017-31756165,31756703-317568... 29 2.0
07_03_1281 - 25439634-25439750,25439868-25440071,25440328-254404... 29 2.6
06_03_1307 + 29218055-29218159,29218249-29218362,29218448-292186... 28 4.6
06_03_0742 + 24027506-24027721,24028835-24029004,24029893-240300... 27 6.0
12_01_0151 - 1158834-1159703,1159917-1160092,1160144-1162097,116... 27 8.0
06_03_1379 - 29709532-29709843,29709951-29710112,29710193-297110... 27 8.0
04_04_0842 + 28616729-28617078,28617166-28617359,28617416-286175... 27 8.0
>08_01_0119 -
951492-951679,951780-951918,952023-952095,952196-952218
Length = 140
Score = 220 bits (538), Expect = 4e-58
Identities = 102/140 (72%), Positives = 117/140 (83%)
Frame = +3
Query: 24 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 203
MGRMH+ GKGIS SA+PY+R+ P+W+K A DV+E I K KKG PSQIGV+LRD HG+
Sbjct: 1 MGRMHSRGKGISSSAIPYKRTPPSWVKTAAADVEEMIMKAAKKGQMPSQIGVVLRDQHGI 60
Query: 204 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 383
V+ VTG KILRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVES
Sbjct: 61 PLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
Query: 384 RIHRLARYYKTKSVLPPNWK 443
RIHRLARYYK LPP WK
Sbjct: 121 RIHRLARYYKRTKKLPPTWK 140
>07_03_0978 +
23099690-23100108,23100530-23100564,23100868-23100926,
23101269-23101310,23102003-23102065,23102172-23102253,
23102570-23102609,23102657-23102753
Length = 278
Score = 198 bits (482), Expect = 3e-51
Identities = 90/140 (64%), Positives = 113/140 (80%)
Frame = +3
Query: 24 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 203
MGRMH+ GKG+S S LPYRR+ P W+K +A +V+E I ++ KKG PSQIG +LRD+H V
Sbjct: 1 MGRMHSSGKGMSCSVLPYRRAAPAWVKTSASEVEEMIVRVAKKGQLPSQIGAILRDAHAV 60
Query: 204 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 383
+ VTG KILR++K+ GLAP++PEDLY+LIKKAVAMRKHLERNRKDKD+KFRLILVES
Sbjct: 61 PLAQGVTGGKILRVLKSRGLAPEVPEDLYFLIKKAVAMRKHLERNRKDKDTKFRLILVES 120
Query: 384 RIHRLARYYKTKSVLPPNWK 443
R+HRL RYY+ +P +K
Sbjct: 121 RVHRLTRYYRLAKKIPAFFK 140
>08_01_0120 -
957365-957552,957642-957780,957847-957970,958398-958486
Length = 179
Score = 192 bits (468), Expect = 1e-49
Identities = 98/149 (65%), Positives = 110/149 (73%), Gaps = 17/149 (11%)
Frame = +3
Query: 48 KGISQSALPYRRSVPTWLKLTADDV-----------------KEQIFKLGKKGLTPSQIG 176
KGIS SALPY+R+ P+WLK A DV +E I K KKG PSQIG
Sbjct: 31 KGISSSALPYKRTPPSWLKTAASDVGAFSFLSLSRLALFHLVEEMIMKAAKKGQMPSQIG 90
Query: 177 VMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDS 356
V+LRD HG+ V+ VTG KILRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDS
Sbjct: 91 VVLRDQHGIPLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDS 150
Query: 357 KFRLILVESRIHRLARYYKTKSVLPPNWK 443
KFRLILVESRIHRLARYYK LPP WK
Sbjct: 151 KFRLILVESRIHRLARYYKRTKKLPPTWK 179
>02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416
Length = 218
Score = 145 bits (351), Expect = 2e-35
Identities = 75/125 (60%), Positives = 89/125 (71%), Gaps = 4/125 (3%)
Frame = +3
Query: 117 DVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYL 296
+V+E I K K G SQIGV+LR HG+ V+ + KIL I+KA GLAP + EDLY+L
Sbjct: 89 EVEEMIMKAAKMGQMSSQIGVVLRHQHGIPLVKSIASSKILHILKAHGLAPKILEDLYFL 148
Query: 297 IKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPP---NW-KYESSNSV 464
IKKAVA+RKHLERNRKDKDS FRLILVESRIHRL RYYK LPP +W + ++V
Sbjct: 149 IKKAVAIRKHLERNRKDKDSSFRLILVESRIHRLVRYYKRTKKLPPTLRSWIIFLEFSTV 208
Query: 465 CSCGL 479
SC L
Sbjct: 209 FSCSL 213
>08_02_1332 +
26207164-26207257,26207454-26207530,26207771-26207841,
26208448-26208502,26209066-26209187,26209272-26209353,
26210070-26210160,26210759-26210982,26211294-26211413,
26211523-26211705
Length = 372
Score = 30.7 bits (66), Expect = 0.65
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 101 QPGRDTAAVRQRRLGYTLARCVHTTHI 21
+P TAA RQ+ + YT C HT+H+
Sbjct: 88 KPEESTAAGRQKPVLYTFINCCHTSHL 114
>11_06_0295 +
22033367-22034947,22035030-22035137,22035230-22035370,
22035576-22035625,22036100-22036168,22036649-22036781,
22037634-22037747,22037826-22038038,22038387-22038500,
22038768-22038900,22039304-22039416,22040204-22040284,
22040397-22040483
Length = 978
Score = 29.5 bits (63), Expect = 1.5
Identities = 22/74 (29%), Positives = 31/74 (41%)
Frame = -1
Query: 341 PITFQMFPHGDSLLDQVVQIFR*IRSKTHSFHDTQDLFTSNKSDLCNTMRVPEHDTDLGR 162
P +FQ+ +G D IF H H+T TS K++LC T+ V L
Sbjct: 749 PASFQLRHNGSCFSDIFYDIFSAWEKNDH--HETYYSLTSLKNNLCQTVNVRNIFEKLRA 806
Query: 161 SKTLFAKFEDLFLN 120
K + DL L+
Sbjct: 807 GKYFASVILDLVLD 820
>07_03_0776 +
21417476-21417691,21417775-21417855,21417941-21418342,
21418457-21418621,21418729-21419460,21419542-21419748
Length = 600
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -2
Query: 289 YKSSGRSGARPIAFMIRRIFLPVTNLTCA 203
Y GR G RP+A M+ R V N TCA
Sbjct: 400 YNVPGRDGYRPVARMLARHDGAVLNFTCA 428
>04_04_1209 +
31755637-31755821,31756017-31756165,31756703-31756845,
31756902-31757024
Length = 199
Score = 29.1 bits (62), Expect = 2.0
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Frame = +3
Query: 231 KILRIMKAMGL-APD--LPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVE----SRI 389
KI R+++A+ A D LP +L ++ AV MR R+RK+KD++ ++++E R
Sbjct: 105 KITRVLRAVHTGAHDRRLPGNLDKTVRVAV-MRPKTSRSRKEKDAEEEVLVIEGIERERE 163
Query: 390 HRLARY 407
HR Y
Sbjct: 164 HRGGEY 169
>07_03_1281 -
25439634-25439750,25439868-25440071,25440328-25440402,
25440477-25440631,25440704-25440824,25440946-25441020,
25441216-25441353,25441617-25441727,25441883-25441987,
25442061-25442139,25442488-25442549,25442634-25442699,
25442812-25442907,25443353-25443403,25443629-25443709
Length = 511
Score = 28.7 bits (61), Expect = 2.6
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Frame = +3
Query: 63 SALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTG-KKIL 239
S +PY T L D++K+Q+ + KG+T + V++ + QV KKI+
Sbjct: 216 SLVPYFLDEETGWGLEVDELKKQLEEAQSKGITVRAL-VVINPGNPTGQVLAEENQKKIV 274
Query: 240 RIMKAMG---LAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 383
K G LA ++ ++ Y+ K K + R+ D L+ +S
Sbjct: 275 EFCKNEGLVLLADEVYQENIYVEDKKFHSFKKIARSMGYTDDDLPLVSFQS 325
>06_03_1307 +
29218055-29218159,29218249-29218362,29218448-29218660,
29218967-29219457,29219653-29219752,29219835-29219894,
29220055-29220147,29220270-29220368,29220484-29220804
Length = 531
Score = 27.9 bits (59), Expect = 4.6
Identities = 16/67 (23%), Positives = 27/67 (40%)
Frame = +3
Query: 273 LPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKYES 452
LP + L+ + + + D S ++ E RL Y ++ PP + +
Sbjct: 70 LPTNAQELLSNISILEGTISKLEDDMVSLHFQLIQERNERRLVEYRLKQAPPPPQLQLQQ 129
Query: 453 SNSVCSC 473
SVCSC
Sbjct: 130 PRSVCSC 136
>06_03_0742 +
24027506-24027721,24028835-24029004,24029893-24030052,
24030162-24030455,24031490-24031717,24031827-24032006,
24032079-24032238,24032591-24032617,24033426-24033613,
24034269-24034532,24035123-24035218,24035311-24035399,
24035473-24035620,24035842-24036051,24036141-24036440,
24037906-24038248,24038747-24038952,24039071-24039273,
24040021-24040117,24040148-24040222,24040328-24040602,
24041116-24041256,24041469-24042339,24042481-24042520,
24042605-24043050
Length = 1808
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 78 RRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRD 191
RRS +++ D +KE + GKK L +++ +L+D
Sbjct: 326 RRSTNETRRISDDTIKEMVASSGKKHLLTTEVESILKD 363
>12_01_0151 -
1158834-1159703,1159917-1160092,1160144-1162097,
1162360-1162620,1162729-1162916,1164127-1164166
Length = 1162
Score = 27.1 bits (57), Expect = 8.0
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = -1
Query: 314 GDSLLDQVVQIFR*IRSKTHSFHDTQDLFTSNKSDLCNTMRVPEHDTDLGRSKTLFAKF 138
GD L V++ + + T + QDL KS L + +HDTD R K K+
Sbjct: 40 GDKLAPLVIREYSSLMGVTKDLQELQDLVEEIKSGL----QSEKHDTDNDRDKYAVLKY 94
>06_03_1379 -
29709532-29709843,29709951-29710112,29710193-29711086,
29712741-29712812,29714106-29714210,29714820-29714900
Length = 541
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 270 DLPEDLYYLIKK-AVAMRKHLERNRKDKDSKFRL 368
DLPE L++ AVA R LE++R D+ FR+
Sbjct: 24 DLPEQQPQLMENVAVAKRSRLEQHRTLSDNSFRV 57
>04_04_0842 +
28616729-28617078,28617166-28617359,28617416-28617582,
28617693-28617928,28618049-28618160
Length = 352
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 157 RPFLPSLKICSLTSSAVSFNQVGTLRRYGSADW 59
R FL L L + V TLR+YG+ DW
Sbjct: 94 RSFLRRLSFQPLRENPVLGPSAATLRKYGALDW 126
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,156,143
Number of Sequences: 37544
Number of extensions: 285756
Number of successful extensions: 812
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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