Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_B17
         (485 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50479-1|AAA93478.1|  151|Anopheles gambiae protein ( Anopheles ...   269   4e-74
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            23   4.2  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            23   4.2  
AJ439060-9|CAD27760.1|  348|Anopheles gambiae putative translati...    22   9.7  

>U50479-1|AAA93478.1|  151|Anopheles gambiae protein ( Anopheles
           gambiae putativeribosomal protein S13 mRNA, complete
           cds. ).
          Length = 151

 Score =  269 bits (659), Expect = 4e-74
 Identities = 123/146 (84%), Positives = 139/146 (95%)
 Frame = +3

Query: 24  MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 203
           MGRMHAPGKGIS+SALPYRRSVP+WLKL+A+DVKEQI KLGKKG+TPSQIG++LRDSHGV
Sbjct: 1   MGRMHAPGKGISKSALPYRRSVPSWLKLSAEDVKEQIKKLGKKGMTPSQIGIILRDSHGV 60

Query: 204 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 383
           AQVRFV G K+LRIMKA+GL PD+PEDLY+LIKKAV++RKHLERNRKD DSKFRLIL+ES
Sbjct: 61  AQVRFVNGNKVLRIMKAVGLKPDIPEDLYFLIKKAVSIRKHLERNRKDIDSKFRLILIES 120

Query: 384 RIHRLARYYKTKSVLPPNWKYESSNS 461
           RIHRLARYYK K+VLPPNWKYESS +
Sbjct: 121 RIHRLARYYKIKAVLPPNWKYESSTA 146


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +3

Query: 198 GVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKK 305
           G++ V+F+T ++   I  +MG+   L  D  Y+ ++
Sbjct: 443 GMSTVKFITYQEASEISGSMGVGWSLQVDCVYIDRR 478


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +3

Query: 198 GVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKK 305
           G++ V+F+T ++   I  +MG+   L  D  Y+ ++
Sbjct: 444 GMSTVKFITYQEASEISGSMGVGWSLQVDCVYIDRR 479


>AJ439060-9|CAD27760.1|  348|Anopheles gambiae putative translation
           initiation factor protein.
          Length = 348

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 99  LKLTADDVKEQIFKL 143
           LKL ADDVK Q+  L
Sbjct: 95  LKLAADDVKGQVESL 109


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 542,059
Number of Sequences: 2352
Number of extensions: 11145
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 42708759
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)