Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_B17
(485 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X79239-1|CAA55821.1| 151|Homo sapiens ribosomal protein S13 pro... 281 9e-76
L01124-1|AAA60283.1| 151|Homo sapiens ribosomal protein S13 pro... 281 9e-76
D88010-1|BAA13528.1| 151|Homo sapiens ribosomal protein S13 pro... 281 9e-76
BC100032-1|AAI00033.1| 151|Homo sapiens ribosomal protein S13 p... 281 9e-76
BC066322-1|AAH66322.1| 151|Homo sapiens ribosomal protein S13 p... 281 9e-76
BC029732-1|AAH29732.1| 151|Homo sapiens ribosomal protein S13 p... 281 9e-76
BC006772-1|AAH06772.1| 151|Homo sapiens ribosomal protein S13 p... 281 9e-76
BC000475-1|AAH00475.1| 151|Homo sapiens ribosomal protein S13 p... 281 9e-76
L05090-1|AAC15854.1| 116|Homo sapiens ribosomal protein S13 pro... 217 2e-56
AE006466-6|AAK61271.1| 275|Homo sapiens tryptase I protein. 29 6.6
AL596244-1|CAI39809.1| 451|Homo sapiens tubulin tyrosine ligase... 29 8.7
AL445587-1|CAI40705.1| 451|Homo sapiens tubulin tyrosine ligase... 29 8.7
AL442634-1|CAI39983.1| 451|Homo sapiens tubulin tyrosine ligase... 29 8.7
>X79239-1|CAA55821.1| 151|Homo sapiens ribosomal protein S13
protein.
Length = 151
Score = 281 bits (689), Expect = 9e-76
Identities = 130/146 (89%), Positives = 141/146 (96%)
Frame = +3
Query: 24 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 203
MGRMHAPGKG+SQSALPYRRSVPTWLKLT+DDVKEQI+KL KKGLTPSQIGV+LRDSHGV
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60
Query: 204 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 383
AQVRFVTG KILRI+K+ GLAPDLPEDLY+LIKKAVA+RKHLERNRKDKD+KFRLIL+ES
Sbjct: 61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120
Query: 384 RIHRLARYYKTKSVLPPNWKYESSNS 461
RIHRLARYYKTK VLPPNWKYESS +
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTA 146
>L01124-1|AAA60283.1| 151|Homo sapiens ribosomal protein S13
protein.
Length = 151
Score = 281 bits (689), Expect = 9e-76
Identities = 130/146 (89%), Positives = 141/146 (96%)
Frame = +3
Query: 24 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 203
MGRMHAPGKG+SQSALPYRRSVPTWLKLT+DDVKEQI+KL KKGLTPSQIGV+LRDSHGV
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60
Query: 204 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 383
AQVRFVTG KILRI+K+ GLAPDLPEDLY+LIKKAVA+RKHLERNRKDKD+KFRLIL+ES
Sbjct: 61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120
Query: 384 RIHRLARYYKTKSVLPPNWKYESSNS 461
RIHRLARYYKTK VLPPNWKYESS +
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTA 146
>D88010-1|BAA13528.1| 151|Homo sapiens ribosomal protein S13
protein.
Length = 151
Score = 281 bits (689), Expect = 9e-76
Identities = 130/146 (89%), Positives = 141/146 (96%)
Frame = +3
Query: 24 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 203
MGRMHAPGKG+SQSALPYRRSVPTWLKLT+DDVKEQI+KL KKGLTPSQIGV+LRDSHGV
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60
Query: 204 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 383
AQVRFVTG KILRI+K+ GLAPDLPEDLY+LIKKAVA+RKHLERNRKDKD+KFRLIL+ES
Sbjct: 61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120
Query: 384 RIHRLARYYKTKSVLPPNWKYESSNS 461
RIHRLARYYKTK VLPPNWKYESS +
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTA 146
>BC100032-1|AAI00033.1| 151|Homo sapiens ribosomal protein S13
protein.
Length = 151
Score = 281 bits (689), Expect = 9e-76
Identities = 130/146 (89%), Positives = 141/146 (96%)
Frame = +3
Query: 24 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 203
MGRMHAPGKG+SQSALPYRRSVPTWLKLT+DDVKEQI+KL KKGLTPSQIGV+LRDSHGV
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60
Query: 204 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 383
AQVRFVTG KILRI+K+ GLAPDLPEDLY+LIKKAVA+RKHLERNRKDKD+KFRLIL+ES
Sbjct: 61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120
Query: 384 RIHRLARYYKTKSVLPPNWKYESSNS 461
RIHRLARYYKTK VLPPNWKYESS +
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTA 146
>BC066322-1|AAH66322.1| 151|Homo sapiens ribosomal protein S13
protein.
Length = 151
Score = 281 bits (689), Expect = 9e-76
Identities = 130/146 (89%), Positives = 141/146 (96%)
Frame = +3
Query: 24 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 203
MGRMHAPGKG+SQSALPYRRSVPTWLKLT+DDVKEQI+KL KKGLTPSQIGV+LRDSHGV
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60
Query: 204 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 383
AQVRFVTG KILRI+K+ GLAPDLPEDLY+LIKKAVA+RKHLERNRKDKD+KFRLIL+ES
Sbjct: 61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120
Query: 384 RIHRLARYYKTKSVLPPNWKYESSNS 461
RIHRLARYYKTK VLPPNWKYESS +
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTA 146
>BC029732-1|AAH29732.1| 151|Homo sapiens ribosomal protein S13
protein.
Length = 151
Score = 281 bits (689), Expect = 9e-76
Identities = 130/146 (89%), Positives = 141/146 (96%)
Frame = +3
Query: 24 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 203
MGRMHAPGKG+SQSALPYRRSVPTWLKLT+DDVKEQI+KL KKGLTPSQIGV+LRDSHGV
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60
Query: 204 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 383
AQVRFVTG KILRI+K+ GLAPDLPEDLY+LIKKAVA+RKHLERNRKDKD+KFRLIL+ES
Sbjct: 61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120
Query: 384 RIHRLARYYKTKSVLPPNWKYESSNS 461
RIHRLARYYKTK VLPPNWKYESS +
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTA 146
>BC006772-1|AAH06772.1| 151|Homo sapiens ribosomal protein S13
protein.
Length = 151
Score = 281 bits (689), Expect = 9e-76
Identities = 130/146 (89%), Positives = 141/146 (96%)
Frame = +3
Query: 24 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 203
MGRMHAPGKG+SQSALPYRRSVPTWLKLT+DDVKEQI+KL KKGLTPSQIGV+LRDSHGV
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60
Query: 204 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 383
AQVRFVTG KILRI+K+ GLAPDLPEDLY+LIKKAVA+RKHLERNRKDKD+KFRLIL+ES
Sbjct: 61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120
Query: 384 RIHRLARYYKTKSVLPPNWKYESSNS 461
RIHRLARYYKTK VLPPNWKYESS +
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTA 146
>BC000475-1|AAH00475.1| 151|Homo sapiens ribosomal protein S13
protein.
Length = 151
Score = 281 bits (689), Expect = 9e-76
Identities = 130/146 (89%), Positives = 141/146 (96%)
Frame = +3
Query: 24 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 203
MGRMHAPGKG+SQSALPYRRSVPTWLKLT+DDVKEQI+KL KKGLTPSQIGV+LRDSHGV
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60
Query: 204 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 383
AQVRFVTG KILRI+K+ GLAPDLPEDLY+LIKKAVA+RKHLERNRKDKD+KFRLIL+ES
Sbjct: 61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120
Query: 384 RIHRLARYYKTKSVLPPNWKYESSNS 461
RIHRLARYYKTK VLPPNWKYESS +
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTA 146
>L05090-1|AAC15854.1| 116|Homo sapiens ribosomal protein S13
protein.
Length = 116
Score = 217 bits (529), Expect = 2e-56
Identities = 103/116 (88%), Positives = 112/116 (96%)
Frame = +3
Query: 57 SQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKI 236
SQSALPYRRSVPTWLKLT+DDVKEQI+KL KKGLTPSQIGV+LRDSHGVAQVRFVTG KI
Sbjct: 1 SQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKI 60
Query: 237 LRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLAR 404
LRI+K+ GLA DLPEDLY+LIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLAR
Sbjct: 61 LRILKSKGLASDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLAR 116
>AE006466-6|AAK61271.1| 275|Homo sapiens tryptase I protein.
Length = 275
Score = 29.5 bits (63), Expect = 6.6
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -3
Query: 96 R*GHCGGTAAPTGIYPCQV--RAYDPYWRLF 10
R G GG AP +P QV R +DPYW F
Sbjct: 28 RVGIVGGQEAPRSKWPWQVSLRVHDPYWMHF 58
>AL596244-1|CAI39809.1| 451|Homo sapiens tubulin tyrosine
ligase-like family, member 11 protein.
Length = 451
Score = 29.1 bits (62), Expect = 8.7
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -2
Query: 163 GVRPFLPSLKICS--LTSSAVSFNQVGTLRRYGSADWDIPLPGACIRPILAAFYLV 2
G R F+ S K+ S L+ +AV + RR+ S D G C++ + AF+ +
Sbjct: 313 GFRTFIRSCKLSSSSLSMAAVDILYIDITRRWNSMTLDQRDSGMCLQAFVEAFFFL 368
>AL445587-1|CAI40705.1| 451|Homo sapiens tubulin tyrosine
ligase-like family, member 11 protein.
Length = 451
Score = 29.1 bits (62), Expect = 8.7
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -2
Query: 163 GVRPFLPSLKICS--LTSSAVSFNQVGTLRRYGSADWDIPLPGACIRPILAAFYLV 2
G R F+ S K+ S L+ +AV + RR+ S D G C++ + AF+ +
Sbjct: 313 GFRTFIRSCKLSSSSLSMAAVDILYIDITRRWNSMTLDQRDSGMCLQAFVEAFFFL 368
>AL442634-1|CAI39983.1| 451|Homo sapiens tubulin tyrosine
ligase-like family, member 11 protein.
Length = 451
Score = 29.1 bits (62), Expect = 8.7
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -2
Query: 163 GVRPFLPSLKICS--LTSSAVSFNQVGTLRRYGSADWDIPLPGACIRPILAAFYLV 2
G R F+ S K+ S L+ +AV + RR+ S D G C++ + AF+ +
Sbjct: 313 GFRTFIRSCKLSSSSLSMAAVDILYIDITRRWNSMTLDQRDSGMCLQAFVEAFFFL 368
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,215,944
Number of Sequences: 237096
Number of extensions: 1564937
Number of successful extensions: 3371
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3371
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4384610846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -