Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_B17
         (485 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-2|AAB47594.1|  151|Caenorhabditis elegans Ribosomal prote...   236   7e-63
U70858-2|AAK68881.1|  177|Caenorhabditis elegans Odorant respons...    27   7.2  
AF324051-1|AAK01412.1|  177|Caenorhabditis elegans Ly-6-related ...    27   7.2  
Z50858-2|CAD44134.1|  467|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z50858-1|CAA90721.1|  453|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z48783-8|CAA88702.2|  308|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z48582-7|CAA88468.2|  308|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z46787-11|CAA86750.1|  610|Caenorhabditis elegans Hypothetical p...    27   9.5  
U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF408757-1|AAO27836.1|  456|Caenorhabditis elegans nucleobindin ...    27   9.5  

>U41534-2|AAB47594.1|  151|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 13 protein.
          Length = 151

 Score =  236 bits (577), Expect = 7e-63
 Identities = 106/146 (72%), Positives = 129/146 (88%)
 Frame = +3

Query: 24  MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGV 203
           MGRMH PGKG+++SA+PYRRSVP+W K+TA++V++QI K+ KKGL PSQIGV+LRDSHGV
Sbjct: 1   MGRMHNPGKGMAKSAIPYRRSVPSWQKMTAEEVQDQIVKMAKKGLRPSQIGVILRDSHGV 60

Query: 204 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 383
            QVR + G KI RI+K+ G+AP+LPEDLY+L+KKAVA+RKHLER+RKD DSK+RLILVES
Sbjct: 61  GQVRRLAGNKIFRILKSKGMAPELPEDLYHLVKKAVAIRKHLERSRKDIDSKYRLILVES 120

Query: 384 RIHRLARYYKTKSVLPPNWKYESSNS 461
           RIHRLARYYKTK  LPP WKYES  +
Sbjct: 121 RIHRLARYYKTKRQLPPTWKYESGTA 146


>U70858-2|AAK68881.1|  177|Caenorhabditis elegans Odorant response
           abnormal protein2, isoform b protein.
          Length = 177

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
 Frame = -1

Query: 365 PEFAVLVLPITFQMFPHGDSLLDQVVQIFR*IRS-KTH-SFH--DTQDLFTSNKSDLCNT 198
           PE A L LP    M P+ +     +  ++R   S  TH   H  +T  L++ N SD+C T
Sbjct: 22  PEDAALRLPCYSCMSPYLEDHYPYISHLYRKPLSFDTHCDKHSLETSYLYSKNCSDMCVT 81

Query: 197 MRV 189
           +R+
Sbjct: 82  LRI 84


>AF324051-1|AAK01412.1|  177|Caenorhabditis elegans Ly-6-related
           protein ODR-2 isoform16 protein.
          Length = 177

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
 Frame = -1

Query: 365 PEFAVLVLPITFQMFPHGDSLLDQVVQIFR*IRS-KTH-SFH--DTQDLFTSNKSDLCNT 198
           PE A L LP    M P+ +     +  ++R   S  TH   H  +T  L++ N SD+C T
Sbjct: 22  PEDAALRLPCYSCMSPYLEDHYPYISHLYRKPLSFDTHCDKHSLETSYLYSKNCSDMCVT 81

Query: 197 MRV 189
           +R+
Sbjct: 82  LRI 84


>Z50858-2|CAD44134.1|  467|Caenorhabditis elegans Hypothetical
           protein F44A6.1b protein.
          Length = 467

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 279 EDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLAR 404
           EDL  LI+K VA    ++  RKD   ++ +       H+LA+
Sbjct: 165 EDLRKLIQKTVADMNVMDEQRKDDFKQYEMKKQAEEDHKLAQ 206


>Z50858-1|CAA90721.1|  453|Caenorhabditis elegans Hypothetical
           protein F44A6.1a protein.
          Length = 453

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 279 EDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLAR 404
           EDL  LI+K VA    ++  RKD   ++ +       H+LA+
Sbjct: 165 EDLRKLIQKTVADMNVMDEQRKDDFKQYEMKKQAEEDHKLAQ 206


>Z48783-8|CAA88702.2|  308|Caenorhabditis elegans Hypothetical
           protein F27E5.2 protein.
          Length = 308

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 120 VKEQIFKLGKKGLTPSQIGVMLRDSHG 200
           V+  I  + KKG+ P  I   L+ SHG
Sbjct: 34  VRHAIISMAKKGIKPCHISRQLKVSHG 60


>Z48582-7|CAA88468.2|  308|Caenorhabditis elegans Hypothetical
           protein F27E5.2 protein.
          Length = 308

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 120 VKEQIFKLGKKGLTPSQIGVMLRDSHG 200
           V+  I  + KKG+ P  I   L+ SHG
Sbjct: 34  VRHAIISMAKKGIKPCHISRQLKVSHG 60


>Z46787-11|CAA86750.1|  610|Caenorhabditis elegans Hypothetical
           protein C16C10.12 protein.
          Length = 610

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 16/73 (21%), Positives = 35/73 (47%)
 Frame = -1

Query: 269 RSKTHSFHDTQDLFTSNKSDLCNTMRVPEHDTDLGRSKTLFAKFEDLFLNIISG*FQPGR 90
           R + ++ +++ D  +   +++   + V   + ++   K LF+K +   LN +SG  +PG 
Sbjct: 9   RKRWNAGYESIDTSSQKLTEVVTPITVTWENIEVKTRKKLFSKKQKQLLNRVSGIAKPGE 68

Query: 89  DTAAVRQRRLGYT 51
             A +     G T
Sbjct: 69  MVALMGASGAGKT 81


>U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical
           protein C18C4.5b protein.
          Length = 1046

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +3

Query: 255 MGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLA 401
           M L+   P D+  L+ +   +RK L+R + +K   F  + + S I +LA
Sbjct: 1   MWLSKQQPHDVNALLAEKQELRKQLDREQNEKQELF--MQINSMIAKLA 47


>U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical
           protein C18C4.5a protein.
          Length = 1022

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +3

Query: 255 MGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLA 401
           M L+   P D+  L+ +   +RK L+R + +K   F  + + S I +LA
Sbjct: 1   MWLSKQQPHDVNALLAEKQELRKQLDREQNEKQELF--MQINSMIAKLA 47


>AF408757-1|AAO27836.1|  456|Caenorhabditis elegans nucleobindin
           protein.
          Length = 456

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 279 EDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLAR 404
           EDL  LI+K VA    ++  RKD   ++ +       H+LA+
Sbjct: 168 EDLRKLIQKTVADMNVMDEQRKDDFKQYEMKKQAEEDHKLAQ 209


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,637,926
Number of Sequences: 27780
Number of extensions: 235456
Number of successful extensions: 604
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)