Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_B16
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...   238   6e-64
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...   237   9e-64
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1...    28   1.2  
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    27   2.7  
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa...    27   3.5  
SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||...    25   8.1  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   8.1  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    25   8.1  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   8.1  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    25   8.1  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  238 bits (582), Expect = 6e-64
 Identities = 114/177 (64%), Positives = 138/177 (77%), Gaps = 2/177 (1%)
 Frame = +2

Query: 176 KIRI-RLGQKRATVDDFPLCVHLVSDD-TALSSEALEAGRICCNKYLVKNCGKDQFHIRM 349
           KIRI  LG+KRA VD+FPLC+HLVS++   ++SEALEA RIC NKYLVK  GKD FH+R+
Sbjct: 30  KIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSFHLRV 89

Query: 350 RLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVI 529
           R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+ D  +A  I
Sbjct: 90  RAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRTKDSSRATAI 149

Query: 530 EALRRAKFKFPGRQKIYVSKKWGFTKYEREEFEKLRDAGRFANDGCNVKYRPEHGPL 700
           EALRR ++KFPG+Q+I VSKKWGF++Y R+E+ + R  G    DGC  K+  + G L
Sbjct: 150 EALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSL 206



 Score = 53.2 bits (122), Expect = 4e-08
 Identities = 20/22 (90%), Positives = 21/22 (95%)
 Frame = +1

Query: 91  MGRRPARCYRYCKNKPYPKSRF 156
           M RRPARCYRYCKNKPYPKSR+
Sbjct: 1   MARRPARCYRYCKNKPYPKSRY 22


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score =  237 bits (581), Expect = 9e-64
 Identities = 114/177 (64%), Positives = 138/177 (77%), Gaps = 2/177 (1%)
 Frame = +2

Query: 176 KIRI-RLGQKRATVDDFPLCVHLVSDD-TALSSEALEAGRICCNKYLVKNCGKDQFHIRM 349
           KIRI  LG+KRA VD+FPLC+HLVS++   ++SEALEA RIC NKYLVK  GKD FH+R+
Sbjct: 30  KIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSFHLRV 89

Query: 350 RLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVI 529
           R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+ D  +A  I
Sbjct: 90  RAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRTKDSSRATAI 149

Query: 530 EALRRAKFKFPGRQKIYVSKKWGFTKYEREEFEKLRDAGRFANDGCNVKYRPEHGPL 700
           EALRR ++KFPG+Q+I VSKKWGF++Y R+E+ + R  G    DGC  K+  + G L
Sbjct: 150 EALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSL 206



 Score = 53.2 bits (122), Expect = 4e-08
 Identities = 20/22 (90%), Positives = 21/22 (95%)
 Frame = +1

Query: 91  MGRRPARCYRYCKNKPYPKSRF 156
           M RRPARCYRYCKNKPYPKSR+
Sbjct: 1   MARRPARCYRYCKNKPYPKSRY 22


>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
           L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
 Frame = +2

Query: 353 LHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGT----VARVRIGQPIMSVRSSDRWKA 520
           L P    R+     C        G     GK +G      AR+ IG+ +  +      K 
Sbjct: 100 LKPIKAARVYTRF-CCNVPVCVKGNETRMGKGKGAFEYWAARIPIGRVLFEIGGDGMRKE 158

Query: 521 QVIEALRRAKFKFPGRQKIYVSK 589
               AL++A F  PG+ +I V +
Sbjct: 159 LAEHALKQAAFHLPGKYEIIVKQ 181


>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = -2

Query: 477 PIRTRATVPWGFPNAPRIPVWSLSAPA---HDNILLMRMTWKGCSLIRMWN*SLPQFFTR 307
           P+RT +   WG+ N   IP+W +  PA   +  I    +T      +R +  +L +FFTR
Sbjct: 81  PLRTLSRW-WGYVNRIEIPLW-MRVPAFGLYSKIFGCNLTEADPDDVRQYK-NLAEFFTR 137

Query: 306 YL 301
            L
Sbjct: 138 KL 139


>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = -3

Query: 332 DLYRSSLRGTCC--NRYG-LLPAPQNSVLYHQTLSARI 228
           DL +  L    C  NR    LP PQ  VL+H  ++AR+
Sbjct: 111 DLSKEELSKWICLFNRISDSLPTPQKKVLFHPAMNARL 148


>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 224

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -2

Query: 456 VPWGFPNAPRIPV 418
           + W FPNAP IPV
Sbjct: 46  IKWIFPNAPSIPV 58


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 233 VHLVSDDTALSSEALEAGRICCN 301
           ++LV    +LSS+ +   RICCN
Sbjct: 255 LNLVKTSESLSSQQMSCLRICCN 277


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/29 (34%), Positives = 21/29 (72%)
 Frame = +3

Query: 615 VRNLRSYVMLDVLLTMDATSSTAQSMDPS 701
           V +LRS+++ + L+++ ++SST   + PS
Sbjct: 176 VASLRSHILFNALISILSSSSTLHKLYPS 204


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 326 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 430
           +D  H+RM ++ FH   IN MLS +  D  +  MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
            transporting Cta4 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1211

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 246  DTKCTHSGKSSTVALFCPSRIRILGQAHPDKPR 148
            DT+ T SG   +V  +C SR R L     ++P+
Sbjct: 1020 DTQYTISGMLMSVCFYCVSRARPLETLSKERPQ 1052


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,232,816
Number of Sequences: 5004
Number of extensions: 69297
Number of successful extensions: 197
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)