Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_B16
(715 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 241 3e-64
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 240 7e-64
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 229 1e-60
02_01_0759 - 5628913-5630870,5631023-5631047 31 0.91
09_06_0274 + 21967740-21968230,21968411-21968550,21968711-219689... 30 2.1
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 30 2.1
08_02_0643 + 19648114-19648612,19648690-19648787 29 4.8
06_01_0499 - 3581145-3582425 29 4.8
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 28 6.4
09_06_0088 + 20774901-20775491,20776172-20776687 28 8.5
05_07_0334 - 29358823-29360247 28 8.5
03_03_0149 + 14843880-14844145,14846501-14846561,14846608-148467... 28 8.5
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 241 bits (591), Expect = 3e-64
Identities = 117/178 (65%), Positives = 136/178 (76%), Gaps = 2/178 (1%)
Frame = +2
Query: 173 PKIRIR-LGQKRATVDDFPLCVHLVS-DDTALSSEALEAGRICCNKYLVKNCGKDQFHIR 346
PKIRI +G K+ VD+FP CVHLVS + +SSEALEA RI CNKY+ KN GKD FH+R
Sbjct: 29 PKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMTKNAGKDAFHLR 88
Query: 347 MRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQV 526
+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++SVR +
Sbjct: 89 VRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHA 148
Query: 527 IEALRRAKFKFPGRQKIYVSKKWGFTKYEREEFEKLRDAGRFANDGCNVKYRPEHGPL 700
EALRRAKFKFPGRQKI S+KWGFTK+ REE+ KL+ GR +DG N + HG L
Sbjct: 149 EEALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRL 206
Score = 48.4 bits (110), Expect = 6e-06
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = +1
Query: 91 MGRRPARCYRYCKNKPYPKSRF 156
MGRRPARCYR KNKPYPKSR+
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRY 22
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 240 bits (588), Expect = 7e-64
Identities = 114/176 (64%), Positives = 135/176 (76%), Gaps = 2/176 (1%)
Frame = +2
Query: 173 PKIRI-RLGQKRATVDDFPLCVHLVS-DDTALSSEALEAGRICCNKYLVKNCGKDQFHIR 346
PKIRI +GQK+ + DDFPLCVHLVS + +SSEALEA RI CNKY+ K+ GKD FH+R
Sbjct: 336 PKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEALEAARIACNKYMAKHAGKDAFHLR 395
Query: 347 MRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQV 526
+ HP+HV+RINKMLSCAGADRLQTGMRGAFGKP GT ARVRIGQ ++SVR D A
Sbjct: 396 VCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTGTCARVRIGQVLLSVRCRDANAAHA 455
Query: 527 IEALRRAKFKFPGRQKIYVSKKWGFTKYEREEFEKLRDAGRFANDGCNVKYRPEHG 694
EALRRAKFKFPGRQ++ S KWGFT+++R+E+ KL+ GR DG N K HG
Sbjct: 456 QEALRRAKFKFPGRQRVIFSAKWGFTRFKRDEYLKLKSEGRIVPDGVNAKLLTRHG 511
Score = 38.3 bits (85), Expect = 0.006
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +1
Query: 103 PARCYRYCKNKPYPKSRF 156
P RCYR KNKPYPKSR+
Sbjct: 312 PVRCYRQIKNKPYPKSRY 329
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/19 (57%), Positives = 17/19 (89%), Gaps = 1/19 (5%)
Frame = +3
Query: 156 CRGVPDPR-SVFDLGKRER 209
CRGVPDP+ +FD+G+++R
Sbjct: 330 CRGVPDPKIRIFDVGQKKR 348
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 229 bits (561), Expect = 1e-60
Identities = 110/170 (64%), Positives = 130/170 (76%), Gaps = 2/170 (1%)
Frame = +2
Query: 173 PKIRIR-LGQKRATVDDFPLCVHLVS-DDTALSSEALEAGRICCNKYLVKNCGKDQFHIR 346
PKIRI +G K+ VD+F CVHLVS + ++SEALEA RI CNKY+ K+ GKD FH+R
Sbjct: 25 PKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEAARIACNKYMTKSAGKDAFHLR 84
Query: 347 MRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQV 526
+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++SVR
Sbjct: 85 VRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKPNNAVHA 144
Query: 527 IEALRRAKFKFPGRQKIYVSKKWGFTKYEREEFEKLRDAGRFANDGCNVK 676
EALRRAKFKFPGRQKI S+KWGFTK+ R+E+ +L+ GR DG N K
Sbjct: 145 SEALRRAKFKFPGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMPDGVNAK 194
Score = 33.5 bits (73), Expect = 0.17
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +1
Query: 112 CYRYCKNKPYPKSRF 156
CYR KNKPYPKSR+
Sbjct: 4 CYRQIKNKPYPKSRY 18
>02_01_0759 - 5628913-5630870,5631023-5631047
Length = 660
Score = 31.1 bits (67), Expect = 0.91
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = -2
Query: 507 SLERTDIMGCPIRT---RATVPWGFPNAPRIPVWSLSAPAHDNILLMRMTWKGCSLIRMW 337
SLER DI CP+ T A V G PN + V S S +D +R + CS I+
Sbjct: 233 SLERLDITRCPLITDKGLAAVAHGCPNLLSLTVESCSGVGNDG---LRAIGRSCSKIQAL 289
Query: 336 N 334
N
Sbjct: 290 N 290
>09_06_0274 +
21967740-21968230,21968411-21968550,21968711-21968905,
21969524-21969652,21970063-21970218,21970507-21970589,
21972229-21972433,21972601-21972805,21973059-21973194,
21973990-21974164,21974470-21974528,21974642-21974716,
21974804-21974920,21975010-21975080,21975170-21975473,
21975721-21976086,21976404-21976514
Length = 1005
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 215 PLSLSFAQVEYGSWVRHTPTNRDLGYGLFL 126
PL LSFA+ +G H P ++ GY F+
Sbjct: 398 PLMLSFARTSFGGQTAHLPKSKSSGYKHFV 427
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 29.9 bits (64), Expect = 2.1
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = -2
Query: 486 MGCPIRTRATVPWGFPNAPRIPVWSLSAPAH 394
+ CP+ + + VP P++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>08_02_0643 + 19648114-19648612,19648690-19648787
Length = 198
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 21 RWRRLNYGSPGCRIRHEALCGE 86
RW R+N P C H LCG+
Sbjct: 142 RWLRVNLACPTCNATHIQLCGD 163
>06_01_0499 - 3581145-3582425
Length = 426
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 641 HHVASQIPHVRTW*SPTS*IHRSSGDQG 558
H A+++ HVR W SPTS + D G
Sbjct: 116 HGAAAELAHVRAWWSPTSHAAAADWDDG 143
>09_06_0320 - 22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 440 GKPQGTVARVRIGQPIMSVRSSD 508
G PQ T+ R+ +G P +S++S+D
Sbjct: 1089 GTPQQTLERLHVGHPTLSLQSND 1111
>09_06_0088 + 20774901-20775491,20776172-20776687
Length = 368
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = -2
Query: 549 LARRRASMT---CAFQRSLERTDIMGCPIRTRATVPWGFPNAPRIPVWSLSAPAHDNILL 379
L R +S+T C+ ++ T+++GCP+R V G P + R + P D +
Sbjct: 207 LELRESSITPIHCSDEQLAAVTEVLGCPVRLLPIVYLGLPLSVRKLGKADLQPMMDRLAK 266
Query: 378 MRMTWK 361
+WK
Sbjct: 267 SLASWK 272
>05_07_0334 - 29358823-29360247
Length = 474
Score = 27.9 bits (59), Expect = 8.5
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Frame = -3
Query: 308 GTCCNRYG-LLPAPQNSVLYHQTLSARIVGSHPLSLSFAQVEYGSWVRHTPTNRDLGYGL 132
G+ +YG + APQ+ LY+ S H L+ + A+ + V + DL Y L
Sbjct: 296 GSHVMQYGDMALAPQSLDLYYMDTSPATANDHKLAAAGAKGSHSYTVSVNQRDADLLY-L 354
Query: 131 FLQYR*HLAGRRPIVFSTKRLVPNSAARGSI 39
+ +YR G V + +RLV R +
Sbjct: 355 WRKYRRAGEGTAEKVEARERLVQEMGRRSRV 385
>03_03_0149 +
14843880-14844145,14846501-14846561,14846608-14846720,
14848448-14848540,14849578-14849793,14853773-14856023
Length = 999
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -3
Query: 401 QRTTTFY*CG*HGRGVVSSGCGTDLYRSSLRGTCCNRYGLLPAPQ 267
+ TTT CG HGR ++SS L+++++ G+ +Y + PQ
Sbjct: 134 RETTTTSSCGEHGRILLSSP-SPSLFKANVLGSLAYKYITMGIPQ 177
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,155,608
Number of Sequences: 37544
Number of extensions: 531707
Number of successful extensions: 1455
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1452
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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