Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_B16
         (715 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   248   4e-66
AC006808-1|AAF60813.1|  486|Caenorhabditis elegans Hypothetical ...    31   0.62 
Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical ...    28   5.8  
Z66515-10|CAI70410.1|  510|Caenorhabditis elegans Hypothetical p...    28   7.6  
Z66515-9|CAA91346.1|  519|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  248 bits (606), Expect = 4e-66
 Identities = 118/180 (65%), Positives = 139/180 (77%), Gaps = 2/180 (1%)
 Frame = +2

Query: 176 KIRI-RLGQKRATVDDFPLCVHLVSDDTA-LSSEALEAGRICCNKYLVKNCGKDQFHIRM 349
           KIRI  LG KRA VD FP CVH++S++   LSSEALEA RIC NKY+VKNCGKD FH+R+
Sbjct: 30  KIRIFDLGNKRANVDTFPACVHMMSNEREHLSSEALEAARICANKYMVKNCGKDGFHLRV 89

Query: 350 RLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVI 529
           R HPFHV RINKMLSCAGADRLQTGMRGA+GKPQG VARV IG  + S+R  +      I
Sbjct: 90  RKHPFHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVARVDIGDILFSMRIKEGNVKHAI 149

Query: 530 EALRRAKFKFPGRQKIYVSKKWGFTKYEREEFEKLRDAGRFANDGCNVKYRPEHGPLDVW 709
           EA RRAKFKFPGRQ I  S+KWGFTK++RE++E++R  GR  +DG  V+ + EHGPL  W
Sbjct: 150 EAFRRAKFKFPGRQIIVSSRKWGFTKWDREDYERMRAEGRLRSDGVGVQLQREHGPLTKW 209



 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 21/22 (95%), Positives = 21/22 (95%)
 Frame = +1

Query: 91  MGRRPARCYRYCKNKPYPKSRF 156
           MGRRPARCYRY KNKPYPKSRF
Sbjct: 1   MGRRPARCYRYIKNKPYPKSRF 22


>AC006808-1|AAF60813.1|  486|Caenorhabditis elegans Hypothetical
           protein Y58G8A.1 protein.
          Length = 486

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +2

Query: 2   TKLELHAVAASKLWIPGLQ--NSARGALW 82
           T +   ++A+SKLW P LQ  NSARG  W
Sbjct: 95  TNISTLSIASSKLWQPALQLYNSARGNSW 123


>Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical
           protein C09G5.2 protein.
          Length = 476

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 447 GFPNAPRIPVWSLSAPA 397
           GFPN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248


>Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical
           protein F01G10.1 protein.
          Length = 618

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +2

Query: 428 RGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIE--ALRRAKFKFPGRQK 574
           R   GKP   +A+   G+ I  + + D W  + +    +   K +F G QK
Sbjct: 228 RSTKGKPTAIIAKTLKGKGIEGIENEDNWHGKPVPEGTVNAIKARFHGSQK 278


>AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical
           protein Y32F6A.3 protein.
          Length = 655

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
 Frame = +3

Query: 270 RRWKQAVSVATSTS-----*RTAVKISSTSG*DYTPS 365
           RRWK+ V +AT+TS      R+ V+ +STS    TP+
Sbjct: 504 RRWKKVVPIATNTSVSSSTPRSVVRTTSTSSVPTTPT 540


>Z66515-10|CAI70410.1|  510|Caenorhabditis elegans Hypothetical
           protein R53.1b protein.
          Length = 510

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 460 YCALGFPERTT-HPSLEPISSSARQHFIDA 374
           Y +LG  + T  HP+L  +SS  R+H++ A
Sbjct: 465 YTSLGGRDNTVKHPALRIVSSDGREHYLPA 494


>Z66515-9|CAA91346.1|  519|Caenorhabditis elegans Hypothetical
           protein R53.1a protein.
          Length = 519

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 460 YCALGFPERTT-HPSLEPISSSARQHFIDA 374
           Y +LG  + T  HP+L  +SS  R+H++ A
Sbjct: 474 YTSLGGRDNTVKHPALRIVSSDGREHYLPA 503


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,332,699
Number of Sequences: 27780
Number of extensions: 410739
Number of successful extensions: 1045
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)