Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_B15
         (457 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006D0148 Cluster: hypothetical protein TTHERM_0082...    36   0.55 
UniRef50_Q1FM67 Cluster: Cobalamin B12-binding:Radical SAM; n=4;...    34   1.7  
UniRef50_Q24C49 Cluster: Cyclic nucleotide-binding domain contai...    31   8.9  

>UniRef50_UPI00006D0148 Cluster: hypothetical protein
           TTHERM_00825720; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00825720 - Tetrahymena
           thermophila SB210
          Length = 908

 Score = 35.5 bits (78), Expect = 0.55
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = +1

Query: 136 LVLILFCFIYFFLRQR*KPLYNALKWRPFVNTLQEFCDISVSFLSLHFI 282
           ++LI+F  IYFF RQ  +  Y+ LK   FV+  Q+   +++S + L F+
Sbjct: 848 MLLIIFLTIYFFKRQISQSEYDTLKNYSFVSYTQDLVKVNLSAIFLSFL 896


>UniRef50_Q1FM67 Cluster: Cobalamin B12-binding:Radical SAM; n=4;
           Clostridiales|Rep: Cobalamin B12-binding:Radical SAM -
           Clostridium phytofermentans ISDg
          Length = 583

 Score = 33.9 bits (74), Expect = 1.7
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 224 LILYKNFVTSPFHFYH-CTSFVTTSKLYHVNTTKMK*YRIKLMY 352
           L   ++F+ SPFHFY     F  TS L+ +N  +++ Y I L +
Sbjct: 429 LAFLEHFIESPFHFYEDLAKFYETSGLFGLNHNRIRRYEILLEF 472


>UniRef50_Q24C49 Cluster: Cyclic nucleotide-binding domain containing
            protein; n=1; Tetrahymena thermophila SB210|Rep: Cyclic
            nucleotide-binding domain containing protein -
            Tetrahymena thermophila SB210
          Length = 1683

 Score = 31.5 bits (68), Expect = 8.9
 Identities = 19/70 (27%), Positives = 35/70 (50%)
 Frame = -1

Query: 211  ILEHCKEVFTFALERNK*NKKVLKLISHKTYY*FHLMLIYFDLFNRKLCFALCQIHRITT 32
            +L   ++V+ F+ E     +  L  +  K  Y F  +LI F  F  +LC  + + + +  
Sbjct: 974  VLNTNQKVYLFSEELQDRKEITLFYLKKKALYDFIPLLIIFISFQFELCMKVKKYYLVQL 1033

Query: 31   YNIILLEFLV 2
            +N+IL  FL+
Sbjct: 1034 FNLILKLFLL 1043


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 368,330,773
Number of Sequences: 1657284
Number of extensions: 5887688
Number of successful extensions: 12473
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12472
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 23931581955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)