Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_B15
         (457 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81562-3|CAB04557.1|  352|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z67755-3|CAA91756.1|  189|Caenorhabditis elegans Hypothetical pr...    28   3.7  
AF125956-5|AAD14722.2|  353|Caenorhabditis elegans Serpentine re...    27   4.9  
Z81502-2|CAB04106.2|  720|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z81562-3|CAB04557.1|  352|Caenorhabditis elegans Hypothetical
           protein K03D7.6 protein.
          Length = 352

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +1

Query: 88  QNIST*DEINNMFCVKLVLIL--FCFIYFFLRQR*KPLYNALKWRPFVNTLQ 237
           +N+ T   IN++FC  L L L   C +YFFL          L W    N +Q
Sbjct: 60  KNVKTSLLINHLFCALLDLFLCTVCTVYFFLPMYGMFFVGVLSWFEVPNGVQ 111


>Z67755-3|CAA91756.1|  189|Caenorhabditis elegans Hypothetical
           protein F54F7.3 protein.
          Length = 189

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = +1

Query: 142 LILFCFIYFFLRQR*KPLYNALKWRPFVNTLQEFCDISVSFLSLHFIC-DNIKTLSRKHH 318
           ++LFC   FF+R       ++ K  P  N++     + ++ L +   C D +    +K +
Sbjct: 5   IVLFCLTVFFIRNSLSAESSSEKKIPPANSVDSNKSLCITHLKIFETCIDGLHNAYKKIN 64

Query: 319 QNEII*D*INVLEIKTIATKM 381
           + ++I   IN    KTI  K+
Sbjct: 65  EEDLISGNIN----KTITLKL 81


>AF125956-5|AAD14722.2|  353|Caenorhabditis elegans Serpentine
           receptor, class h protein80 protein.
          Length = 353

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 196 YNALKWRPFVNTLQEFCDISVSFLSLHFICDNIKTLSRKHHQN 324
           Y    W+ + +T+  F  I++ F S  F C   KT   KH  N
Sbjct: 20  YFLCSWQDYAHTMHIFAGIAIPFYSFGFHCILFKT--PKHMNN 60


>Z81502-2|CAB04106.2|  720|Caenorhabditis elegans Hypothetical
           protein F14B6.2 protein.
          Length = 720

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 404 QKEVVFFGILVAMVFISNTLI*SYIISFW 318
           +K V+FFG  +++V +   LI    ISFW
Sbjct: 33  RKSVLFFGCPLSVVLVLIVLIKCLCISFW 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,999,164
Number of Sequences: 27780
Number of extensions: 157511
Number of successful extensions: 397
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)