Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_B14
         (539 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   3.0  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   3.0  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    22   4.0  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   5.2  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   5.2  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   5.2  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   9.2  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    21   9.2  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 8/24 (33%), Positives = 10/24 (41%)
 Frame = +1

Query: 40   CLDQPGRVFTVEWVSPPIWCGRNV 111
            C     +   V WVSPP+     V
Sbjct: 1109 CTTLTAQTIRVSWVSPPLTAANGV 1132



 Score = 20.6 bits (41), Expect = 9.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 43  LDQPGRVFTVEWVSP 87
           LD+ GR   + WV+P
Sbjct: 905 LDKSGRSVQLSWVAP 919


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 392 GTVKIYIKFESTNNHHNT*SKIKFNVFSYYLIVFVMFHL 508
           GT K   +  S N  HN+   ++ N  S+  + + + HL
Sbjct: 412 GTFKGIPRLASLNLGHNSQLTLEINGLSFQGLEYTLLHL 450


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 189 IFFGLKDFKLAFIEISVLSGAAVATTISFAH 281
           +FFG K   L  +   +  G  V T I+ AH
Sbjct: 179 VFFGNKPVILTVVLPLLACGVMVVTHITMAH 209


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 157 PPYRLRGKTASSV 119
           PPY+L  KTA S+
Sbjct: 145 PPYQLDSKTAGSM 157


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 157 PPYRLRGKTASSV 119
           PPY+L  KTA S+
Sbjct: 37  PPYQLDSKTAGSM 49


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 470 FSYYLIVFVMFHLIKRW 520
           F+YY+IV   F+  + W
Sbjct: 78  FNYYVIVVTTFYKRRTW 94


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = -1

Query: 308 KEKASCLIDMRERD 267
           +E+ +C+ID R+R+
Sbjct: 123 REEKNCIIDKRQRN 136


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 230 DISIIGSCCSY 262
           D+ +IG+ CSY
Sbjct: 158 DVDLIGNVCSY 168


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,864
Number of Sequences: 336
Number of extensions: 2728
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13201902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)