Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_B14
         (539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual    61   9e-11
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    30   0.19 
SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr 1|||...    25   7.2  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   7.2  
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa...    25   9.5  

>SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 61.3 bits (142), Expect = 9e-11
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
 Frame = +3

Query: 6   RKKPSWTPPKWVFGPAWTGLYSGMGIASYLVWE-ECGGFTDEAVXXXXXXXXXXXXNWAW 182
           +K+P + PP   FGPAWT LY  MG AS+L ++ +    T+ +             N+AW
Sbjct: 42  KKQPKFHPPASAFGPAWTLLYLTMGYASHLAYKADPLMITNASRNGSILYIAQLAANFAW 101

Query: 183 TPIFFGLKDFKLAFIEISVLSG 248
            P+F+GL   KLA  ++ +L+G
Sbjct: 102 MPLFYGLAKPKLALADLGILTG 123


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 30.3 bits (65), Expect = 0.19
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = -2

Query: 205 FSPKNIGVQAQFRSSCPPYRLRGKTASSVNPPHSSHTR*EAIPIPL*RPVQAGPNTHLG 29
           F P N   Q  F    PP+++RGK    +   H+S  R  +       P +A P  HLG
Sbjct: 173 FLPFNPAAQPPFP---PPFKMRGKRGFGMRHEHNSELRRHSPGNRRFNPYKAYPQPHLG 228


>SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 485 IVFVMFHLIKRWL 523
           +VFV+F+LI RWL
Sbjct: 222 LVFVLFYLIYRWL 234


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 368 QSQTGYRQGTVKIYIKFESTNNHHNT 445
           +S   +R G  KI+I+ ES +N +NT
Sbjct: 776 ESVKKHRDGLSKIFIRPESADNSNNT 801


>SPBC215.15 |sec13||COPII-coated vesicle component
           Sec13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
 Frame = +3

Query: 30  PKWVFGPAWTGLYSGMGIASY----LVWEECGGFTDEAVXXXXXXXXXXXXNWA 179
           P W  G A     + +  ASY    +VW E GG   E +            +WA
Sbjct: 55  PVWQLGWAHPKFGTILASASYDGHVIVWRETGGVWSELMDHTAHQASVNAVSWA 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,168,004
Number of Sequences: 5004
Number of extensions: 42311
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)