Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_B14
         (539 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0272 + 19053455-19053587,19054665-19056627,19056827-190568...    30   1.4  
11_01_0532 + 4201374-4201401,4201475-4202652,4204316-4204670,420...    29   2.4  
11_05_0043 - 18561039-18562114,18562338-18562503                       29   3.1  
11_01_0364 - 2790450-2790464,2790601-2791116                           28   5.5  
05_06_0144 - 25973635-25973801,25973878-25973947,25974049-259741...    28   5.5  
12_02_1250 - 27337435-27338817                                         27   9.6  

>06_03_0272 +
           19053455-19053587,19054665-19056627,19056827-19056887,
           19056975-19057198,19057573-19057642,19058453-19058515
          Length = 837

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 352 TPSGRTIPNRLSTRHSKDLY 411
           T  GR+IPNR+S  HS+ +Y
Sbjct: 82  TADGRSIPNRISALHSRSVY 101


>11_01_0532 +
           4201374-4201401,4201475-4202652,4204316-4204670,
           4204791-4204864,4206965-4207056,4207500-4207573,
           4207680-4207822,4207889-4207909
          Length = 654

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +1

Query: 319 WRGWG-TPAHSPTPSGRTIPNRLSTRHSKDLYKIRINE 429
           WR W   P  SP+PS R+     +  HS D     +NE
Sbjct: 15  WRKWKRNPTASPSPSNRSSAAAAAADHSDDSDSAAVNE 52


>11_05_0043 - 18561039-18562114,18562338-18562503
          Length = 413

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -2

Query: 304 RRPAVLLTCAKEIVVATAAPDNT--DISIKASL 212
           RR  VL+ CA+  ++A AAPD    D  + ASL
Sbjct: 178 RRARVLVACAEVFLIALAAPDEARLDALVAASL 210


>11_01_0364 - 2790450-2790464,2790601-2791116
          Length = 176

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 67  TVEWVSPPIWCG 102
           T +W++PP WCG
Sbjct: 134 TTQWLAPPAWCG 145


>05_06_0144 -
           25973635-25973801,25973878-25973947,25974049-25974190,
           25974647-25974827,25975248-25975443
          Length = 251

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +2

Query: 155 WATAPELGLDPDILRAERLQTGLYRDISIIGSCCSYDYLF 274
           +AT  E+G   D+ +   +  GL+  +S++GSCC++  LF
Sbjct: 156 FATLREIGQGHDLKKFLIVVVGLWV-LSVLGSCCNFLTLF 194


>12_02_1250 - 27337435-27338817
          Length = 460

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 18/52 (34%), Positives = 22/52 (42%)
 Frame = +1

Query: 46  DQPGRVFTVEWVSPPIWCGRNVADLLMRQFYLLAYTVGNCS*TGLGPRYSSG 201
           DQ GR  TV WV+P +    NV    +R   L     G       G +Y SG
Sbjct: 64  DQTGRAMTVSWVTPKL-PDSNVVRYGLRADNLTHTANGTFRRYSFGRKYRSG 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,668,319
Number of Sequences: 37544
Number of extensions: 304136
Number of successful extensions: 817
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)