Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_B14
         (539 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81048-2|CAB02840.1|  553|Caenorhabditis elegans Hypothetical pr...    36   0.025
Z78546-5|CAO79773.1|  962|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z78546-4|CAB01771.3|  920|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AC084159-20|AAK39363.1|  315|Caenorhabditis elegans Hypothetical...    27   6.5  
Z81124-3|CAB03373.1|  341|Caenorhabditis elegans Hypothetical pr...    27   8.6  
L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (spli...    27   8.6  

>Z81048-2|CAB02840.1|  553|Caenorhabditis elegans Hypothetical
           protein C41G7.3 protein.
          Length = 553

 Score = 35.5 bits (78), Expect = 0.025
 Identities = 32/123 (26%), Positives = 49/123 (39%), Gaps = 2/123 (1%)
 Frame = +3

Query: 9   KKPSWTPPKW-VFGPAWTGLYSGMGIASYLVWEECGGFT-DEAVXXXXXXXXXXXXNWAW 182
           KKP+W P    V+        S +G ASYLV++  GGF  ++                A 
Sbjct: 426 KKPNWAPKDVRVYSAVDLLTLSPLGYASYLVYKNGGGFDYNDTKLALGLYGASVTLAVAT 485

Query: 183 TPIFFGLKDFKLAFIEISVLSGAAVATTISFAHVNKTXXXXXXXXXXXXXXXSALSYSIW 362
            PI    K+    +   +V+S  A A + +F  ++K                + L+YSI 
Sbjct: 486 IPI-VKKKELGCLWKNTTVVSLTAAAASFAFYKIDKKAGLLVVPFAVWTAFYAYLAYSIK 544

Query: 363 KNN 371
           K N
Sbjct: 545 KEN 547


>Z78546-5|CAO79773.1|  962|Caenorhabditis elegans Hypothetical
           protein T21H8.1b protein.
          Length = 962

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -2

Query: 202 SPKNIGVQAQFRSSCPPYRLRGKTASSVNPPHSSH 98
           S  + G    +    PPYR+RG    S  P H  H
Sbjct: 80  SAPSAGSSCSYLPPPPPYRMRGSGGLSSKPQHKIH 114


>Z78546-4|CAB01771.3|  920|Caenorhabditis elegans Hypothetical
           protein T21H8.1a protein.
          Length = 920

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -2

Query: 202 SPKNIGVQAQFRSSCPPYRLRGKTASSVNPPHSSH 98
           S  + G    +    PPYR+RG    S  P H  H
Sbjct: 80  SAPSAGSSCSYLPPPPPYRMRGSGGLSSKPQHKIH 114


>AC084159-20|AAK39363.1|  315|Caenorhabditis elegans Hypothetical
           protein Y73B3A.9 protein.
          Length = 315

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -2

Query: 244 DNTDISIKASLKS-FSPKNIGVQAQFRSSCPPYR 146
           DN +  I  S K+ F P N  +Q++F+   PP++
Sbjct: 159 DNVEKVIDESTKAGFIPSNSAIQSEFQPQSPPFQ 192


>Z81124-3|CAB03373.1|  341|Caenorhabditis elegans Hypothetical
           protein T21B4.5 protein.
          Length = 341

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +2

Query: 134 FTS*PIRWATAPELGLDPDILRAERLQTGLYRDISIIGSCCSYDYLF 274
           F + P     AP L  D  +     L  G    +S+  SCC Y YLF
Sbjct: 192 FFTEPFIMLAAPGLWEDYMVTTTSLLNMGFIFQVSLFSSCCIY-YLF 237


>L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp
           (splicing factor) relatedprotein 8 protein.
          Length = 2329

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 117 IRHIPPTPDRRRYPFHCKDPSRLVQT 40
           ++H PP P +RRY F     ++  QT
Sbjct: 451 LKHRPPKPQKRRYLFRSFKATKFFQT 476


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,976,833
Number of Sequences: 27780
Number of extensions: 240575
Number of successful extensions: 664
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)