Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_B14
         (539 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   3.5  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   4.6  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   4.6  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   4.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   6.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   6.1  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   8.1  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
          receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 52 AGPNTHLGGVQLGFF 8
          +GP    GGV+LG+F
Sbjct: 55 SGPEESSGGVELGWF 69


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/33 (27%), Positives = 13/33 (39%)
 Frame = +3

Query: 21  WTPPKWVFGPAWTGLYSGMGIASYLVWEECGGF 119
           W    ++   AW   Y  M + S L W  C  +
Sbjct: 72  WMNVYYIVILAWAIFYFFMSMRSELPWGSCNNY 104


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -1

Query: 308 KEKASCLIDMRERD 267
           +E+ SC+ID R+R+
Sbjct: 147 REEKSCIIDKRQRN 160


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -1

Query: 308 KEKASCLIDMRERD 267
           +E+ SC+ID R+R+
Sbjct: 147 REEKSCIIDKRQRN 160


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/31 (29%), Positives = 13/31 (41%)
 Frame = +3

Query: 21  WTPPKWVFGPAWTGLYSGMGIASYLVWEECG 113
           WT   ++   AW   Y  + +   L W  CG
Sbjct: 110 WTNIYYIIILAWALFYLLVSLRIDLPWRTCG 140


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/31 (29%), Positives = 13/31 (41%)
 Frame = +3

Query: 21  WTPPKWVFGPAWTGLYSGMGIASYLVWEECG 113
           WT   ++   AW   Y  + +   L W  CG
Sbjct: 163 WTNIYYIIILAWALFYLLVSLRIDLPWRTCG 193


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 325 GWGTPAHSPTPSG 363
           G G   H+PTP+G
Sbjct: 118 GMGHMGHTPTPNG 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,518
Number of Sequences: 438
Number of extensions: 3596
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)