Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_B13
         (411 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal...   171   2e-43
AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal pro...   171   2e-43
AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal pro...   171   2e-43
Z77663-10|CAB01204.1|  543|Caenorhabditis elegans Hypothetical p...    38   0.002
AF067949-5|AAC19234.1|  109|Caenorhabditis elegans Synaptobrevin...    30   0.57 
AF003282-1|AAB61235.1|  109|Caenorhabditis elegans SNB-1 protein.      30   0.57 
AF003281-1|AAB61234.1|  109|Caenorhabditis elegans SNB-1 protein.      30   0.57 
Z70206-1|CAA94124.1|  407|Caenorhabditis elegans Hypothetical pr...    29   1.3  
AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian el...    27   4.0  
AC025726-28|AAK73928.1|  118|Caenorhabditis elegans Hypothetical...    27   7.0  
Z79753-7|CAB02085.2|  448|Caenorhabditis elegans Hypothetical pr...    26   9.2  

>AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal
           protein L10A protein.
          Length = 186

 Score =  171 bits (416), Expect = 2e-43
 Identities = 78/105 (74%), Positives = 93/105 (88%)
 Frame = +3

Query: 45  SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHV 224
           SESLIKQIPR+LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKKVLCLSVAVGHV
Sbjct: 82  SESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHV 141

Query: 225 DMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 359
            +T +EL  N+ LSINFLVSLLKK+WQNVRSL++KSTMG PQR+Y
Sbjct: 142 GLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 186


>AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform b protein.
          Length = 155

 Score =  171 bits (416), Expect = 2e-43
 Identities = 78/105 (74%), Positives = 93/105 (88%)
 Frame = +3

Query: 45  SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHV 224
           SESLIKQIPR+LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKKVLCLSVAVGHV
Sbjct: 51  SESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHV 110

Query: 225 DMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 359
            +T +EL  N+ LSINFLVSLLKK+WQNVRSL++KSTMG PQR+Y
Sbjct: 111 GLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 155


>AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform a protein.
          Length = 216

 Score =  171 bits (416), Expect = 2e-43
 Identities = 78/105 (74%), Positives = 93/105 (88%)
 Frame = +3

Query: 45  SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHV 224
           SESLIKQIPR+LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKKVLCLSVAVGHV
Sbjct: 112 SESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHV 171

Query: 225 DMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 359
            +T +EL  N+ LSINFLVSLLKK+WQNVRSL++KSTMG PQR+Y
Sbjct: 172 GLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 216


>Z77663-10|CAB01204.1|  543|Caenorhabditis elegans Hypothetical
           protein F53F4.11 protein.
          Length = 543

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 21/95 (22%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
 Frame = +3

Query: 66  IPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLS-VAVGHVDMTPDE 242
           +   LG    +A K P    +Q+ ++  I+    T+ + +++ +  S V VGH+  +  +
Sbjct: 317 VKSFLGKEFYRAHKCPLPFVYQKPISTAIENALRTVVYPLRRYMVRSCVNVGHLGQSSAD 376

Query: 243 LAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPP 347
           L +N+   +  + S     + N+RS+++ ++ G P
Sbjct: 377 LKENIDTVLEKIASKCPGGFANIRSIYLGASDGKP 411


>AF067949-5|AAC19234.1|  109|Caenorhabditis elegans Synaptobrevin
           related protein 1 protein.
          Length = 109

 Score = 30.3 bits (65), Expect = 0.57
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +3

Query: 87  GLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLS 266
           G ++ G  P     Q++  Q +DEV G +K  ++KVL     +  +D   D L +     
Sbjct: 11  GGSQGGPRPSNKRLQQTQAQ-VDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQF 69

Query: 267 INFLVSLLKKH-WQNVRSL 320
                +L +K+ W+N++ +
Sbjct: 70  EKSAATLKRKYWWKNIKMM 88


>AF003282-1|AAB61235.1|  109|Caenorhabditis elegans SNB-1 protein.
          Length = 109

 Score = 30.3 bits (65), Expect = 0.57
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +3

Query: 87  GLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLS 266
           G ++ G  P     Q++  Q +DEV G +K  ++KVL     +  +D   D L +     
Sbjct: 11  GGSQGGPRPSNKRLQQTQAQ-VDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQF 69

Query: 267 INFLVSLLKKH-WQNVRSL 320
                +L +K+ W+N++ +
Sbjct: 70  EKSAATLKRKYWWKNIKMM 88


>AF003281-1|AAB61234.1|  109|Caenorhabditis elegans SNB-1 protein.
          Length = 109

 Score = 30.3 bits (65), Expect = 0.57
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +3

Query: 87  GLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLS 266
           G ++ G  P     Q++  Q +DEV G +K  ++KVL     +  +D   D L +     
Sbjct: 11  GGSQGGPRPSNKRLQQTQAQ-VDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQF 69

Query: 267 INFLVSLLKKH-WQNVRSL 320
                +L +K+ W+N++ +
Sbjct: 70  EKSAATLKRKYWWKNIKMM 88


>Z70206-1|CAA94124.1|  407|Caenorhabditis elegans Hypothetical
           protein C49F8.1 protein.
          Length = 407

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 204 SVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPP 347
           SV + H+ ++P+ L Q   L+  F  +     W+ +R   MKS +G P
Sbjct: 349 SVTIDHLRISPESLVQIARLAQAFGTN---PDWKKLRLADMKSALGTP 393


>AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian
           elks/cast/erc/rab6 interactingprotein homolog protein 1
           protein.
          Length = 836

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 57  IKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIK 176
           I +IP   G GLN A ++  L    ++M +K+++   +IK
Sbjct: 142 ISRIPTGTGSGLNIAREYEQLKVEYDTMMEKLNQTMNSIK 181


>AC025726-28|AAK73928.1|  118|Caenorhabditis elegans Hypothetical
           protein Y71G12B.27 protein.
          Length = 118

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 356 QSLGWSHCRLHMQRAHIL 303
           QSLGW H  +H    HIL
Sbjct: 48  QSLGWEHYMVHNPEKHIL 65


>Z79753-7|CAB02085.2|  448|Caenorhabditis elegans Hypothetical
           protein F20G2.5 protein.
          Length = 448

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -2

Query: 179 EFDGSLDFINFLCHGFLVG*ETRELASLIETRTKETRNL 63
           EF GS D  +FL +  +VG       + +ET TK T NL
Sbjct: 393 EFTGSTDISSFLLNFEIVGNPATATTAQLETTTK-TANL 430


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,299,808
Number of Sequences: 27780
Number of extensions: 190032
Number of successful extensions: 429
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)