Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_B12
         (572 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ...    29   0.48 
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    28   0.84 
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    28   1.1  
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    27   1.5  
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    25   6.0  
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo...    25   7.9  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    25   7.9  

>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 22/81 (27%), Positives = 36/81 (44%)
 Frame = +1

Query: 322 NSEMRNVELEQYALSLDQFGKRLANIKFNKKEEINLRNETLEEKLQLLCDNVNTFTQMVK 501
           N    N   ++  LSL + GK+ ANI F    + +   E L+E L +L D   +   +++
Sbjct: 231 NPVNENESEDEEGLSLSEDGKKFANIDFG---DYSSSEEFLKEHLNILADEEESDAILLE 287

Query: 502 AKTALSESNKNWTPTQDNNAL 564
           A  A  E   +      + AL
Sbjct: 288 AFNAELEGKPSLAKQYVHQAL 308


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 38/160 (23%), Positives = 68/160 (42%)
 Frame = +1

Query: 55   LADSQKAMDNIKNMFSSIPTFDSEGEAARGDLRHADILNFLEVGPPQXXXXXXXXXXXXX 234
            LA +++ MD++KN   +I +  +E E  R +  + D+ + L V   +             
Sbjct: 1010 LASNERLMDDLKNNGENIASLQTEIEKKRAE--NDDLQSKLSVVSSEYENLLLISSQTNK 1067

Query: 235  XXXXXXXSMKLHTEDLKRKTVLPETQLTWNSEMRNVELEQYALSLDQFGKRLANIKFNKK 414
                    +K   +++++  +L E       + RNVELE+      + G+  A I   K 
Sbjct: 1068 SLEDKTNQLKYIEKNVQK--LLDE------KDQRNVELEELTSKYGKLGEENAQI---KD 1116

Query: 415  EEINLRNETLEEKLQLLCDNVNTFTQMVKAKTALSESNKN 534
            E + LR ++  +K   LC N   F   +K K+   E   N
Sbjct: 1117 ELLALRKKS--KKQHDLCAN---FVDDLKEKSDALEQLTN 1151


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = +1

Query: 343  ELEQYALSLDQFGKRLANIKFNKKEEINLRNETLEEKLQLLCDNV 477
            EL+ Y LSL++ G  L    F+K +E+N     LEEK+ L  ++V
Sbjct: 1548 ELDLYELSLNECGTFLQKEWFDKDDELN-----LEEKIALQRNSV 1587


>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = -2

Query: 367 SLKHIVPILHFSFHCSMLTASQAKRFFFSNL 275
           +LK++ P+LHFSFH  ++  ++   +  ++L
Sbjct: 309 ALKNLSPMLHFSFHGMLMIVTEWAAYEMTSL 339


>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 85  IKNMFSSIPTFDSEGEAARGDLRHADILNF 174
           ++ +FS IP F    +  R   R +DI NF
Sbjct: 1   MRTVFSQIPRFKQVNQYIRMSTRQSDISNF 30


>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = +1

Query: 406 NKKEEINLRNETLEEKLQLLCDNVNTFTQMVKA----KTALSESNKNWTPTQDNNALCY 570
           NK++    RN+   EK +LL +  N+  ++ +     K  L+E+N N    + +N   Y
Sbjct: 38  NKQKNKKSRNQVRREKKKLLREKTNSGAKLAEKNSDDKDQLTENNDNLYNDKKSNGNFY 96


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 19/96 (19%), Positives = 34/96 (35%)
 Frame = +1

Query: 58  ADSQKAMDNIKNMFSSIPTFDSEGEAARGDLRHADILNFLEVGPPQXXXXXXXXXXXXXX 237
           AD +K   ++K++         +GE  R DL+  D   F +                   
Sbjct: 247 ADKKKLKKDLKDLVEEFQPILDKGEELRSDLKLKDD-TFNDYSSASMELNTSNLRARASF 305

Query: 238 XXXXXXSMKLHTEDLKRKTVLPETQLTWNSEMRNVE 345
                   KL+ +    +T+L    LT N   ++V+
Sbjct: 306 SNFMENEKKLYEKVNTNRTLLRNANLTLNEAQQSVK 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.128    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,283,483
Number of Sequences: 5004
Number of extensions: 45148
Number of successful extensions: 88
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)