Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_B12
(572 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0265 - 1754861-1755063,1755186-1755360,1755558-1755653,175... 37 0.013
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 31 0.86
08_02_0971 - 23151055-23151930,23152024-23152290 30 1.1
01_05_0024 - 17262504-17263308,17264251-17264399,17264879-172649... 30 1.1
12_02_0179 - 14952398-14952511,14953333-14953356,14953543-149536... 30 1.5
06_01_0309 - 2233573-2234556,2234670-2234721,2235406-2236391,223... 29 2.0
06_01_0977 + 7585817-7585970,7586057-7586146,7586500-7586702,758... 29 3.5
10_08_0269 - 16366392-16366403,16366469-16368262 28 4.6
05_01_0105 + 696604-696846,696880-697989 28 6.1
06_03_1377 - 29692895-29692899,29700435-29702190 27 8.0
>02_01_0265 -
1754861-1755063,1755186-1755360,1755558-1755653,
1756110-1756256,1756343-1756511,1756661-1756812,
1756898-1756968,1757064-1757247,1757332-1757523,
1757664-1757771
Length = 498
Score = 36.7 bits (81), Expect = 0.013
Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 3/158 (1%)
Frame = +1
Query: 37 INLDKELADSQKAMDNIKNMFSSIPTFDSEGEAARGDLRHADILNFLEVGPPQXXXXXXX 216
++LDK L +K++DNI+N I G A + D ++++ L
Sbjct: 27 VSLDKALGKKEKSLDNIRNQIEQI----QSGIAMKNDEMGTELIDQLTSEERDLLSRLNP 82
Query: 217 XXXXXXXXXXXXXSMKLHTEDLKRKTVLPETQLTWNSEMRNVELEQYALSLDQFGKRLAN 396
+ ++ E K + ET L+ N R ELE S D K L
Sbjct: 83 EITELKEKFLLCKNSRIEIETRKEEL---ETNLSTNLMRRQKELEAIISSAD--SKTLPL 137
Query: 397 IKFNKKEEINLRNETLEEKLQLL---CDNVNTFTQMVK 501
+K++E+ +L+E +L D +N FT+ ++
Sbjct: 138 EAESKEQELKSSKRSLDELTAMLKANVDAINNFTRKME 175
>02_05_0702 - 31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 30.7 bits (66), Expect = 0.86
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +1
Query: 412 KEEINLRNETLEEKLQLLCDNVNTFTQMVKAKTALSESNKNWTPTQDN 555
KE LRNE E+ +Q+ T++ +K AL E K W QDN
Sbjct: 1065 KEISVLRNEVSEKVIQI----EKLETELASSKRALDEQYKRWRSAQDN 1108
>08_02_0971 - 23151055-23151930,23152024-23152290
Length = 380
Score = 30.3 bits (65), Expect = 1.1
Identities = 23/80 (28%), Positives = 34/80 (42%)
Frame = -2
Query: 397 YSPSAFRTDLSLKHIVPILHFSFHCSMLTASQAKRFFFSNLPYAISSRLLRFRDPHLW*Y 218
++P F +H +LH + T + F + LP A SSRLL P +
Sbjct: 138 FAPRHFAAGAFFRHGDGMLHGRLGALVTTTERRHWFESAALPVAPSSRLLSQLGPVIAPA 197
Query: 217 QSCRAVIPEEVLLLKNSRYL 158
+ A EE L+ +N R L
Sbjct: 198 RRAAATPEEEALMQENHRLL 217
>01_05_0024 -
17262504-17263308,17264251-17264399,17264879-17264978,
17265829-17265953,17267565-17267743,17269648-17270698
Length = 802
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = +1
Query: 319 WNSEMRNVELEQYALSLDQFGKRLANIKFNKKEEINLRNETLEEKLQL 462
W+ ++ + +E ++ F + ++NI ++EE+NLR E + L
Sbjct: 642 WHDQLERLPIELAKTAIKSFAEVISNIVLLQEEEVNLRRRCEETRRDL 689
>12_02_0179 -
14952398-14952511,14953333-14953356,14953543-14953670,
14953765-14953891,14953930-14954013,14954245-14954397,
14954478-14954579,14955036-14955128,14955289-14955350,
14955395-14955522,14957053-14957291,14958040-14958471,
14958774-14958912,14960564-14960883
Length = 714
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 373 DLSLKHIVPILHFSFHCSMLTASQAKRFFFSNL 275
DL +I P LH HCSM+ +A+ + NL
Sbjct: 572 DLQNVYIFPFLHQESHCSMVYFKEARAWIIRNL 604
>06_01_0309 -
2233573-2234556,2234670-2234721,2235406-2236391,
2237790-2238050
Length = 760
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Frame = +1
Query: 262 KLHTEDLKRKTVLPETQLTWNSEMRNVELEQ---YALSLDQFGKRLANIKFNKKEEINLR 432
++H D+K +T L + ++ +NVE+E+ + S D F R A + + K ++ +
Sbjct: 230 RIHVSDVKSRTPLKDKEMEAAQTSKNVEVEKSSSFHASKDMFESRHAKV-YPKMDKTGII 288
Query: 433 NETLE 447
N++ E
Sbjct: 289 NDSDE 293
>06_01_0977 + 7585817-7585970,7586057-7586146,7586500-7586702,
7587274-7587452,7587913-7587991,7588403-7588537,
7588651-7588800,7588887-7588997,7589084-7590004,
7590351-7590623,7590853-7591062,7591425-7591573,
7591716-7592052
Length = 996
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/63 (26%), Positives = 32/63 (50%)
Frame = +1
Query: 352 QYALSLDQFGKRLANIKFNKKEEINLRNETLEEKLQLLCDNVNTFTQMVKAKTALSESNK 531
+Y + D + + L + K E++N R ET+ E+L+ + V++ + A S +NK
Sbjct: 818 EYVCARDNYMRCLCSSLKVKAEDVNGRVETILEELRTTRNEVSSLRSKIAVLKAASLANK 877
Query: 532 NWT 540
T
Sbjct: 878 ATT 880
>10_08_0269 - 16366392-16366403,16366469-16368262
Length = 601
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 391 ANIKFNKKEEINLRNETLEEKLQLLCDNVNTFTQMVKAKTALSESNK 531
A ++ K ++N NE LEE++ LL N + K + S SN+
Sbjct: 217 AEVEDKSKSKVNEVNEDLEEEMILLARRFNDLLERRKERGRGSNSNR 263
>05_01_0105 + 696604-696846,696880-697989
Length = 450
Score = 27.9 bits (59), Expect = 6.1
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +1
Query: 391 ANIKFNKKEEINLRNETLEEKLQLLCDNVNTFTQMVKAKTALSESN--KNWTPTQD-NNA 561
A ++ K ++N NE LEE++ LL N K + + S SN +N P + +N
Sbjct: 206 AEVEDKGKGKVNEVNEDLEEEISLLARRFNDLLGRRKERESGSNSNRRRNRRPNKTLSNL 265
Query: 562 LCY 570
C+
Sbjct: 266 RCF 268
>06_03_1377 - 29692895-29692899,29700435-29702190
Length = 586
Score = 27.5 bits (58), Expect = 8.0
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +1
Query: 391 ANIKFNKKEEINLRNETLEEKLQLLCDNVNTFTQMVKAKTALSESN--KNWTPTQD-NNA 561
A ++ K ++N NE LEE++ LL N K + S SN +N P + +N
Sbjct: 217 AEVEDKSKSKVNEVNEDLEEEMVLLARRFNDLLGRRKERGRGSNSNRRRNRRPNKTLSNL 276
Query: 562 LCY 570
C+
Sbjct: 277 RCF 279
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.128 0.361
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,223,310
Number of Sequences: 37544
Number of extensions: 262566
Number of successful extensions: 413
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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