Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_B10
(544 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c... 85 8e-18
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.59
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 27 2.4
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 25 5.5
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 25 5.5
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop... 25 7.2
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 25 7.2
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 25 9.5
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 25 9.5
>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 479
Score = 84.6 bits (200), Expect = 8e-18
Identities = 48/141 (34%), Positives = 70/141 (49%)
Frame = +3
Query: 117 REANWPSVLFFIHIHLLSLYGIWLLFYEIKWMTXXXXXXXXXXXXXGMTTGAHRLWAHRS 296
R NW + + ++++YG++ + K T G+T G HRLW+HR+
Sbjct: 60 RHLNWLHCMLIFGLPMIAIYGVFTTPLQTK--TLIFAIIYYAYSGLGITAGYHRLWSHRA 117
Query: 297 YKATTGLRITLMLFQTLAGVGSIYDWVQYHRLHHAHFATEDDPYNYKKGFLHCHILTRMR 476
YKA L L A GSI W + HR HH + T+ DPYN KKGF + H+ +
Sbjct: 118 YKAKKPLEYFLAAGGAAAFEGSIRWWSRDHRAHHRYTDTDKDPYNVKKGFWYAHVGWMII 177
Query: 477 KLSPHQEKLKESIDMSDLESD 539
+P ++ S D+SDL SD
Sbjct: 178 LQNP--RRIGRS-DVSDLNSD 195
>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 28.7 bits (61), Expect = 0.59
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +3
Query: 69 INETVTTDPEKVLSKSREANWPSVLFFIHIHLLSLYGIWLLFYEI 203
+N+ + +KVL K+R + S+ +H HL+ +LL+++I
Sbjct: 121 VNKLIPIPKKKVL-KNRAKSLLSIKSHVHFHLIPFINFFLLYHQI 164
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 26.6 bits (56), Expect = 2.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 130 GHLFCSLYTYICYHYMEYG 186
G L C+LY I HY+ YG
Sbjct: 1697 GKLVCNLYKTILKHYVHYG 1715
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 48 TFIRMAEINETVTTDPEKVLSKSREANWPSVLFFIHI-HLL 167
TF+R+ E+ + + ++ + E + S L IH+ HLL
Sbjct: 738 TFLRLLEVGNEIESVTHLIIDEVHERSIDSDLLLIHVLHLL 778
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 25.4 bits (53), Expect = 5.5
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +1
Query: 124 RIGHLFCSLYTYICYHYMEYGFCSM 198
R H+ S IC+ + +YGFC +
Sbjct: 278 RYVHIHYSENAPICFEFAKYGFCEL 302
>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
pyrophosphate phosphatase fusion 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 25.0 bits (52), Expect = 7.2
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +3
Query: 342 TLAGVGSIYDWVQYHRLHHAHFATED--DPYNYKKGFL-HCHILTRMRKLSPHQEKLKE 509
++ G+G + W+Q H + ++ TE D Y FL H + + + EKLKE
Sbjct: 156 SILGLGIWHSWIQNHVVQAQYYRTEKQYDKYLENNKFLTHLNNEVLHDNYTRNIEKLKE 214
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 25.0 bits (52), Expect = 7.2
Identities = 8/34 (23%), Positives = 17/34 (50%)
Frame = +3
Query: 402 HFATEDDPYNYKKGFLHCHILTRMRKLSPHQEKL 503
H+ ++DP N + H H+ + K + H ++
Sbjct: 320 HYINDNDPSNSYSSYQHSHVHDFIHKNNTHSNRV 353
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = +3
Query: 309 TGLRITLMLFQTLAGVGSIYDWVQYHRL-----HHAHFATEDDPY 428
+G+ L + +L G+G + D+V YH L + + T DPY
Sbjct: 1054 SGMPCHLHVTSSLYGLGYLPDYVIYHELVLTSKEYMNIVTSVDPY 1098
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 262 LQGPIGCGLIGLIKQLPDYVS 324
+ GP GCG L+ L DY S
Sbjct: 377 INGPKGCGKSNLVHSLFDYYS 397
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,256,069
Number of Sequences: 5004
Number of extensions: 46898
Number of successful extensions: 124
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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