Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_B10
(544 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1603 - 34716753-34717097,34717512-34717659,34717747-347179... 31 0.79
12_02_1072 + 25834719-25834908,25837822-25838099,25839265-25839798 30 1.0
08_01_0675 - 5840867-5841253,5842699-5842997,5844022-5844202 29 3.2
03_01_0186 + 1491202-1491210,1491401-1491476,1491573-1492075 28 5.5
05_01_0462 - 3658153-3658290,3658394-3658540,3658622-3658720,365... 27 7.3
04_04_0788 + 28064684-28066584,28066692-28066815,28066908-280672... 27 7.3
01_01_0645 + 4890647-4890682,4891684-4891929,4892021-4892317,489... 27 7.3
08_02_1130 + 24517319-24518149,24519374-24519868,24519954-245201... 27 9.7
02_03_0390 + 18448671-18448889,18449567-18449632,18449702-184497... 27 9.7
02_01_0601 + 4465775-4465924,4466070-4466531,4466613-4467445,446... 27 9.7
01_06_0495 - 29779499-29781325 27 9.7
>04_04_1603 -
34716753-34717097,34717512-34717659,34717747-34717984,
34718075-34718285,34718398-34718513,34718698-34718793,
34719279-34719306
Length = 393
Score = 30.7 bits (66), Expect = 0.79
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = -2
Query: 186 AIFHIVIANVCV*RTEQMANSLLDSC*APSLDLSSPSRLFPPFL*MSATAVTGQTAYCVP 7
A H IA+ V R + +N LLD P + ++LFP + +T V G T Y P
Sbjct: 176 AYLHEEIASPIVHRDIKASNILLDKLYNPKIGDFGLAKLFPDNITHISTRVAGTTGYLAP 235
>12_02_1072 + 25834719-25834908,25837822-25838099,25839265-25839798
Length = 333
Score = 30.3 bits (65), Expect = 1.0
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +3
Query: 264 TGAHRLWAHRSYKATTGLRITLMLFQTLAGVGSIYDWVQY-HRLHHAHFATEDDPYNYKK 440
TG R+ A R A G+R TL+ +Q A G +WV + +R+ H + ++ K+
Sbjct: 101 TGKDRVVARRG--ALVGMRKTLVFYQGRAPKGRKTEWVMHEYRMEGVH-DQQASSFSSKE 157
Query: 441 GFLHCHILTRMR 476
++ C ++ + +
Sbjct: 158 DWVLCRVICKRK 169
>08_01_0675 - 5840867-5841253,5842699-5842997,5844022-5844202
Length = 288
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = +3
Query: 303 ATTGLRITLMLFQTLAGVGSIYDWVQYHRLHHAHFATEDDPYNYKKGFLHCHILTRMRKL 482
A G+R TL+ ++ A G +WV + F E P + K+ ++ C + + R+
Sbjct: 122 AAVGMRKTLVFYRGRAPKGRKTEWVMH------EFRLEPQPLHLKEDWVLCRVFYKTRQT 175
Query: 483 SP 488
P
Sbjct: 176 IP 177
>03_01_0186 + 1491202-1491210,1491401-1491476,1491573-1492075
Length = 195
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 84 TTDPEKVLSKSREANWPSVL 143
T DP V+SK R+A+WP+ +
Sbjct: 47 TVDPVNVVSKLRKASWPAYI 66
>05_01_0462 -
3658153-3658290,3658394-3658540,3658622-3658720,
3658802-3659253,3659597-3660280,3662072-3662180
Length = 542
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 377 NPVVYRTHAGQGLKKHQRDT*SGSCFIRPMSPQPMGP 267
NP+++ T G G+ + + S + F RPM P P+ P
Sbjct: 140 NPIIHPTD-GFGVGNYYAGSSSNTQFSRPMPPNPIPP 175
>04_04_0788 +
28064684-28066584,28066692-28066815,28066908-28067285,
28067286-28067488,28067615-28067897
Length = 962
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -2
Query: 501 VFPGAGSVSSFELVCGSGGN-LFYNCTGRPP 412
V PG+GSVSS G GGN ++ RPP
Sbjct: 80 VVPGSGSVSSASSSPGGGGNGESFSFKNRPP 110
>01_01_0645 +
4890647-4890682,4891684-4891929,4892021-4892317,
4892407-4892574,4892674-4892841,4892924-4893004,
4893105-4893171,4893657-4893751,4894027-4894099,
4894177-4894247,4894325-4894374,4895263-4895375,
4895461-4895513
Length = 505
Score = 27.5 bits (58), Expect = 7.3
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +3
Query: 321 ITLMLFQTLAGVGSIYDWVQYHR-LHHA--HFATEDDPYNYKKGFLHCH 458
+T+ + QTL G G Y W ++ + LH + H A E D F H
Sbjct: 326 VTVSVLQTLLGGGGTYSWGRHGKGLHSSLNHLANEFDQIRSIAAFKDVH 374
>08_02_1130 +
24517319-24518149,24519374-24519868,24519954-24520179,
24520267-24520291,24520925-24521234,24521328-24521888
Length = 815
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 155 VYKEQNRWPIRFSTLAKHLLWICRHRLVYFRHSY 54
+YK +N PIR+S L K+ R R+VY + Y
Sbjct: 303 IYKRKNSDPIRYSLLEKN-----RERIVYLQKLY 331
>02_03_0390 + 18448671-18448889,18449567-18449632,18449702-18449761,
18449864-18449959,18452287-18452447,18452669-18452790,
18452872-18453239,18453653-18453739,18453835-18453969,
18454349-18454471,18454771-18454854,18455023-18455187,
18455310-18455486,18455660-18455773,18455912-18456016,
18457056-18457174,18457244-18457385,18457461-18457555,
18457757-18457862,18458125-18458204,18458285-18458461,
18459828-18459912,18460024-18460104,18460208-18460351,
18460468-18460563,18460654-18460854,18461462-18461895,
18462417-18462478,18462622-18462872,18462956-18463030,
18463110-18463300,18463696-18463867,18463956-18464020,
18464646-18464778,18464861-18464962,18465047-18465130,
18465656-18465730,18465818-18465877,18465967-18466223,
18466560-18466608,18466781-18466941,18467013-18467079,
18467174-18467299,18467422-18467592,18468566-18468769,
18469059-18469165,18469608-18469737,18469774-18469959,
18470704-18470742
Length = 2202
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 363 IYDWVQYHRLHHAHFATEDDPYNY 434
I++WV+ LH+ H D YNY
Sbjct: 1862 IFEWVELEPLHYWHSLLFMDQYNY 1885
>02_01_0601 +
4465775-4465924,4466070-4466531,4466613-4467445,
4467528-4467597,4467613-4467698,4467865-4468036,
4468481-4468519,4469410-4469430
Length = 610
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +2
Query: 368 RLGSVPQTTSRTLRYGGRPVQL*KRFPPLPHTNSNEETEPAPGKTKGV 511
R+G PQ TS +YG + +Q ++ +P ++ E A G+ +G+
Sbjct: 4 RIGWAPQGTSARRQYGPKKMQPLQQRMSMPRFQTSLNKELATGRGQGL 51
>01_06_0495 - 29779499-29781325
Length = 608
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 326 VDAFSDLGRRGFDIRLGSVP 385
+DAFS L RRG D+ G VP
Sbjct: 70 LDAFSSLHRRGSDVPPGCVP 89
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,218,761
Number of Sequences: 37544
Number of extensions: 330817
Number of successful extensions: 870
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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