Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_B09
         (428 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0819 - 24977204-24977290,24977372-24977746,24977823-249781...    27   4.9  

>06_03_0819 -
           24977204-24977290,24977372-24977746,24977823-24978199,
           24978456-24978770,24978861-24979296,24979386-24979463
          Length = 555

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 144 NVR*NRAGVPSRPLCVKTIKNPCIYLLCWVTS 49
           N+R +R G+P  PLC   ++N   Y +  + S
Sbjct: 32  NIRHHRVGIPYHPLCRSALQNIGFYQIAKMRS 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,690,149
Number of Sequences: 37544
Number of extensions: 136677
Number of successful extensions: 245
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)