Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_B08
         (488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.06c |||ribose-phosphate pyrophosphokinase |Schizosaccha...   107   9e-25
SPBC3D6.06c |||ribose-phosphate pyrophosphokinase |Schizosacchar...    92   4e-20
SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo...    85   4e-18
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    28   0.66 
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    28   0.66 
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    28   0.87 
SPCC1442.09 |trp3||anthranilate synthase component I|Schizosacch...    25   8.1  

>SPCC1620.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 321

 Score =  107 bits (257), Expect = 9e-25
 Identities = 47/76 (61%), Positives = 64/76 (84%)
 Frame = +3

Query: 261 NIKVFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETCVEIGESVRGEDVYIVQSGSGE 440
           +IK+F+G+SHP+LA+K+  R+G+ LGKV   ++SN ET V IGESVR EDV+I+Q+G G 
Sbjct: 5   SIKIFAGNSHPELAEKVARRIGLSLGKVAVVQYSNRETSVTIGESVRDEDVFILQTGCGS 64

Query: 441 INDNLIELLIMINACK 488
           IND+L+ELLIMINAC+
Sbjct: 65  INDHLMELLIMINACR 80


>SPBC3D6.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 341

 Score = 92.3 bits (219), Expect = 4e-20
 Identities = 44/78 (56%), Positives = 56/78 (71%)
 Frame = +3

Query: 255 MPNIKVFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETCVEIGESVRGEDVYIVQSGS 434
           M N+ VF   SHP L + I + L +D+G+V   KFSN ET V I +SVRG DVYIV   S
Sbjct: 1   MKNLVVFGTESHPKLTESICEHLCLDIGRVELSKFSNGETSVRIKQSVRGCDVYIVSPAS 60

Query: 435 GEINDNLIELLIMINACK 488
           G++ND+L+ELLIMI+ACK
Sbjct: 61  GQVNDHLMELLIMISACK 78


>SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase
           Prs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 85.4 bits (202), Expect = 4e-18
 Identities = 42/78 (53%), Positives = 56/78 (71%)
 Frame = +3

Query: 255 MPNIKVFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETCVEIGESVRGEDVYIVQSGS 434
           M +  +  G SHP+L   I +RLGI    V  K+F+N ET VEI ESVR +DV+I+QSGS
Sbjct: 1   MKSATIIGGGSHPELLHLISNRLGITPCDVSLKRFANGETSVEIRESVRDKDVFILQSGS 60

Query: 435 GEINDNLIELLIMINACK 488
             +ND+L+ELLI+I+ACK
Sbjct: 61  STVNDSLMELLIIISACK 78


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 28.3 bits (60), Expect = 0.66
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
 Frame = -2

Query: 406 SPRTDSPISTHVSMLLNFL--VTTLPRSMPSRSTIFWAKSGCELPLKTLMFGILVVSGRT 233
           S +TD P++    +  N +  ++ +P  +PS ST  WA      P  T    I      +
Sbjct: 176 SSKTDDPMANLDIVAFNTIRILSAIPSPLPSSSTSSWADE--PSPSSTETSSIKRAFQES 233

Query: 232 WSNLLT--TSSNVTVDFIDTIHGRV 164
           W + L+   S N+    ++ IH RV
Sbjct: 234 WLSALSLPLSVNLYKQVLNVIHKRV 258


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 28.3 bits (60), Expect = 0.66
 Identities = 27/104 (25%), Positives = 43/104 (41%)
 Frame = -2

Query: 412 TSSPRTDSPISTHVSMLLNFLVTTLPRSMPSRSTIFWAKSGCELPLKTLMFGILVVSGRT 233
           +SS  T  PISTH S   N     L  S  S ++  ++ S   +   +     +  S +T
Sbjct: 54  SSSSSTFVPISTHTSSATNTTSGQLSISSSSSTSSEYSSSSIPITTVSSSDSFIPSSSQT 113

Query: 232 WSNLLTTSSNVTVDFIDTIHGRVSSLASSDMRRDNNKINYLCKS 101
            S   +T+ NV V    +I   VSS   S +    +   ++  S
Sbjct: 114 ISASSSTTDNVIVS--SSISSTVSSTPVSTIYSGTSGTTFVSSS 155


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 27.9 bits (59), Expect = 0.87
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = -2

Query: 235 TWSNLLTTSSNVTVDFIDTIHGRVSSLASSDMRRDNNKINYLCKSNKR 92
           T S+ L+ SS V +  +  +   VSS +SSD+  D N  +Y+  S ++
Sbjct: 180 TPSDRLSPSSLVPLLKLPALDHAVSSSSSSDLPSDPNSASYIASSKQK 227


>SPCC1442.09 |trp3||anthranilate synthase component
           I|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 489

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 363 NMETCVEIGESVRGEDVYIVQSGSGEINDN 452
           NM+TC+ I   V  +    +Q+G G + D+
Sbjct: 425 NMDTCIAIRTMVYKDGTVYLQAGGGIVFDS 454


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,837,251
Number of Sequences: 5004
Number of extensions: 34695
Number of successful extensions: 119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)