Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_B08
         (488 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0763 - 24405525-24405701,24406209-24406368,24406924-244070...    84   5e-17
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143...    37   0.010
07_03_0797 + 21575948-21576042,21576140-21576902,21577134-215773...    33   0.16 
08_02_1493 + 27512473-27512557,27512670-27513351,27513459-275135...    30   0.87 
07_01_0678 - 5103836-5104613,5104697-5104888,5104994-5105036,510...    28   3.5  
10_08_1064 + 22636603-22636785,22636901-22637671,22637749-22638960     27   8.1  

>06_03_0763 -
           24405525-24405701,24406209-24406368,24406924-24407005,
           24407098-24407167,24407443-24407607,24407731-24407874,
           24408467-24408715,24409006-24409221,24409306-24409398
          Length = 451

 Score = 84.2 bits (199), Expect = 5e-17
 Identities = 38/79 (48%), Positives = 59/79 (74%)
 Frame = +3

Query: 252 RMPNIKVFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETCVEIGESVRGEDVYIVQSG 431
           R   +K+FSG+++  LAQ+I   LG+DLGKV+ K+F++ E  V++ ESVRG DV++VQ  
Sbjct: 86  RDSRLKIFSGTANRPLAQEIASYLGVDLGKVLIKRFADGEIYVQLQESVRGCDVFLVQPT 145

Query: 432 SGEINDNLIELLIMINACK 488
              +N+NL+EL +MI+AC+
Sbjct: 146 CSPVNENLMELFVMIDACR 164


>02_01_0219 -
           1437685-1437723,1437932-1438091,1438385-1438514,
           1438627-1438696,1439264-1439407,1439771-1439837,
           1439970-1440019,1440386-1440559,1440881-1440934,
           1441008-1441112
          Length = 330

 Score = 36.7 bits (81), Expect = 0.010
 Identities = 13/31 (41%), Positives = 25/31 (80%)
 Frame = +3

Query: 264 IKVFSGSSHPDLAQKIVDRLGIDLGKVVTKK 356
           +++FSG+++P L+Q+I   LG++LGK+  K+
Sbjct: 98  LRIFSGTANPSLSQEIASYLGLELGKINIKR 128


>07_03_0797 +
           21575948-21576042,21576140-21576902,21577134-21577327,
           21577667-21577700,21578421-21578485,21579032-21579524
          Length = 547

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +2

Query: 125 VIIPTHIATRERRDATVDCVDEIDSNVRRSSQ*IRPRSTTNYKNAEHQGLQRKLAPGLGP 304
           V++ TH+A  E        V E+D  + RS   +RP S    +  E +GL+ +  P +G 
Sbjct: 188 VVVETHVAPPEMERPKSVGVRELDGGIERSVAPVRPASHEG-RVGEARGLEVQERPRVGD 246

Query: 305 KDRRP 319
              RP
Sbjct: 247 VPERP 251


>08_02_1493 +
           27512473-27512557,27512670-27513351,27513459-27513522,
           27513734-27513961
          Length = 352

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 394 DSPISTHVSMLLNFLVTTLPRSMPSRSTIFWAKSG 290
           D   ST      ++ +T  PRS PS +  FWAK G
Sbjct: 231 DDATSTFTCNHTDYTITFCPRSTPSSTLRFWAKIG 265


>07_01_0678 -
           5103836-5104613,5104697-5104888,5104994-5105036,
           5105712-5105835,5105924-5106016,5106754-5106931,
           5107032-5107138,5108098-5108179,5108277-5108314,
           5108409-5108495,5109025-5109135,5109282-5109773
          Length = 774

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +2

Query: 143 IATRERRDATVDCVDEIDSNVRRSSQ*IRPRSTTNYKNAEH 265
           + TR RR A +  VDEI + +RRS +  R R   NY+  ++
Sbjct: 606 LQTRGRRGAKLRSVDEIQTGLRRSKRSSRQR--INYQQYDY 644


>10_08_1064 + 22636603-22636785,22636901-22637671,22637749-22638960
          Length = 721

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = -2

Query: 370 SMLLNFLVTTLPRSMPSRSTIFWAKSGCELPLKTLMFGILVVSGRTWSNLLTTSSNV 200
           ++  +FLV    R + S+ T  W  +     +KT +   ++VS  TW+  +  SSNV
Sbjct: 55  ALFTSFLVWLEKRYVGSQHTSEWFNTAGR-SVKTGLIASVIVSQWTWAATILQSSNV 110


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,889,737
Number of Sequences: 37544
Number of extensions: 221570
Number of successful extensions: 638
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)