Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_B08
(488 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16635| Best HMM Match : Pribosyltran (HMM E-Value=7.1e-17) 71 5e-13
SB_56877| Best HMM Match : Ion_trans_2 (HMM E-Value=3.1e-11) 32 0.22
SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31) 29 2.1
SB_48269| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_32537| Best HMM Match : Met_10 (HMM E-Value=8.4e-10) 29 2.1
SB_28786| Best HMM Match : PKD_channel (HMM E-Value=0) 29 2.7
SB_8499| Best HMM Match : DUF229 (HMM E-Value=0) 28 4.7
SB_39235| Best HMM Match : BACK (HMM E-Value=2.3e-10) 27 6.3
SB_25560| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_8661| Best HMM Match : Band_7 (HMM E-Value=3.7e-16) 27 8.3
>SB_16635| Best HMM Match : Pribosyltran (HMM E-Value=7.1e-17)
Length = 227
Score = 70.9 bits (166), Expect = 5e-13
Identities = 32/37 (86%), Positives = 35/37 (94%)
Frame = +3
Query: 378 VEIGESVRGEDVYIVQSGSGEINDNLIELLIMINACK 488
VEI ESVRGEDVYI+QSG GEINDN++ELLIMINACK
Sbjct: 2 VEIAESVRGEDVYIIQSGCGEINDNMMELLIMINACK 38
>SB_56877| Best HMM Match : Ion_trans_2 (HMM E-Value=3.1e-11)
Length = 464
Score = 32.3 bits (70), Expect = 0.22
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = -2
Query: 340 LPRSMPSRS-TIFWAKSGCELPLKTLMFGILVVSGRTWSNLLTTSSNVTVDFIDTIHGRV 164
+PRS+PSR + W +G L + + GI V+ SN++ +S++ +H +
Sbjct: 117 VPRSVPSRLFAVVWINAG--LVIIAMFMGI--VTSSLSSNMIGNASHL----YGMVHTNI 168
Query: 163 SSLASSDMRRDNNKINYLCKS 101
LA RRD + + Y C S
Sbjct: 169 RRLAPVGPRRDASTVYYPCSS 189
>SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31)
Length = 367
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +1
Query: 19 EKRRSCIK-NGTTAAQRIPTLTVC 87
++R SC+K NGT+ AQ P TVC
Sbjct: 245 QRRYSCVKLNGTSMAQNYPPDTVC 268
>SB_48269| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1720
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 264 IKVFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETCV 380
+ + GS HP+LA + +R+G + G+ V +K TC+
Sbjct: 1190 VDILMGSDHPELALALEERVG-EPGEPVARKTPQGWTCI 1227
>SB_32537| Best HMM Match : Met_10 (HMM E-Value=8.4e-10)
Length = 397
Score = 29.1 bits (62), Expect = 2.1
Identities = 18/54 (33%), Positives = 34/54 (62%)
Frame = -1
Query: 476 DHNK*FY*IIVDLTATALYYVNIFTAY*FANFHTRFHVAKLLGNNFTEINAQSV 315
++NK F ++++L ATAL ++++F F+ + +F ++ L G+ T IN SV
Sbjct: 226 ENNKMFNHVVMNLPATALQFLDVFKGL-FSGYEDKF-ISSLSGS--TLINLPSV 275
>SB_28786| Best HMM Match : PKD_channel (HMM E-Value=0)
Length = 1846
Score = 28.7 bits (61), Expect = 2.7
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -2
Query: 154 ASSDMR--RDNNKINYLCKSNKR*DKRSTWGFVEPP 53
+S D R R NN+I + CKS+ KR+ G +PP
Sbjct: 624 SSHDARIVRRNNQIEFSCKSSNGRQKRACVGVKDPP 659
>SB_8499| Best HMM Match : DUF229 (HMM E-Value=0)
Length = 926
Score = 27.9 bits (59), Expect = 4.7
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +2
Query: 134 PTHIATRERRDATVDCVDEIDSNVRRSSQ*IRPRSTTNYKNAEHQGLQRKLAPGLGPKD 310
P H R +A V ++++ S+ +SSQ S K++ Q K A LG +D
Sbjct: 784 PNHGHIRRSAEAVVKFINDLTSSDPKSSQLCERLSLKAIKSSHQQMANTKFAQFLGSRD 842
>SB_39235| Best HMM Match : BACK (HMM E-Value=2.3e-10)
Length = 419
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = -2
Query: 307 FWAKSGCELPLKTLMFGILVVSGRTWSNLLTTSSNVTVDFIDT 179
F+ K GC L + R+W L V+V FIDT
Sbjct: 42 FYGKEGCGKTEMLLHLAANCIMPRSWHELYLGGKGVSVIFIDT 84
>SB_25560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 629
Score = 27.5 bits (58), Expect = 6.3
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = -2
Query: 271 TLMFGILVVSGRTWSNLLTTSSNVTVDFIDTIHGRVSSLASSD--MRRDNNKINYLCKSN 98
T++ ILV TW +TT + V FI+T ++ + D + K Y+ KSN
Sbjct: 556 TIVKPILVYGAETWRTTVTTIKKIQV-FINTCLRKILKIRWPDKISNEEQIKYGYVKKSN 614
Query: 97 K 95
+
Sbjct: 615 Q 615
>SB_8661| Best HMM Match : Band_7 (HMM E-Value=3.7e-16)
Length = 500
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +1
Query: 67 IPTLTVCLIVY*TYINSLSCYYPYAYRYSRAKRRDRG 177
+P+LT+CL+ Y T+++S S + +++ K +RG
Sbjct: 1 MPSLTLCLLAYVTFLSSFS-HGAQIHQHGYVKPLNRG 36
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,966,698
Number of Sequences: 59808
Number of extensions: 284667
Number of successful extensions: 833
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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