Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_B08
         (488 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    24   0.76 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   0.76 

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 24.2 bits (50), Expect = 0.76
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +3

Query: 216 VNKLDHVLPLTTR-MPNIKVFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNM 368
           V+     +PL  R +PN   F  S H      +   L   +GK+V +KFS +
Sbjct: 218 VHSSSFCIPLPVRVLPN---FPSSGHWQDQMSLPQMLADKIGKMVNQKFSEL 266


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 0.76
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +3

Query: 237 LPLTTRMPNIKVFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETC 377
           LPL  R        G S   LA+K+ DR+ + +  V+T + +    C
Sbjct: 612 LPLNIRWSYPGEEMGGSSGVLAKKVADRVSMLMISVITARHAGEYVC 658



 Score = 20.6 bits (41), Expect = 9.3
 Identities = 14/65 (21%), Positives = 24/65 (36%)
 Frame = -2

Query: 202  VTVDFIDTIHGRVSSLASSDMRRDNNKINYLCKSNKR*DKRSTWGFVEPPSCRF*YNYAS 23
            V V  I  + G+       D+      +       +R D R   G++ PP+ +      S
Sbjct: 1600 VAVIVICVLRGKGHGSDKDDVVYQQTGVGGATLDKRRPDLRDELGYIAPPNRKLPPVPGS 1659

Query: 22   SLNYC 8
            + N C
Sbjct: 1660 NYNTC 1664


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,220
Number of Sequences: 438
Number of extensions: 2634
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)