Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_B07
         (481 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    27   1.5  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    27   1.5  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    26   2.6  

>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 204 SVGCLNEVNSIQTQICCPSIINNTLKLVFY 115
           S G   + N  ++ + CPS++NN +  VF+
Sbjct: 119 SSGYSLKYNGTESAVACPSLVNNQVYQVFF 148


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 362 LYYSKLPRYVDYKSNKCLCFVCYV 433
           +Y  K  R VDY S  C+C+ C V
Sbjct: 369 VYGKKYDRTVDYWSLGCICYECLV 392


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 162 ICCPSIINNTLKLVFYKYVESYTY*FIKKQY 70
           I C + I+N   LVFY +V+     F K QY
Sbjct: 644 ISCGTTISNFTDLVFYGHVDGKISIFSKTQY 674


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,866,940
Number of Sequences: 5004
Number of extensions: 35666
Number of successful extensions: 53
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)