Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_B07
         (481 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78420-6|CAB01711.2| 1243|Caenorhabditis elegans Hypothetical pr...    31   0.57 
Z78418-6|CAB01699.2| 1243|Caenorhabditis elegans Hypothetical pr...    31   0.57 
AF067216-2|AAC17527.2|  343|Caenorhabditis elegans Hypothetical ...    28   3.1  
Z83233-4|CAB05758.1|  298|Caenorhabditis elegans Hypothetical pr...    27   5.3  
U61947-14|ABA29341.1|  413|Caenorhabditis elegans Nuclear hormon...    27   7.0  
U61947-13|AAB03131.3|  429|Caenorhabditis elegans Nuclear hormon...    27   7.0  
AY204189-1|AAO39193.1|  429|Caenorhabditis elegans nuclear recep...    27   7.0  
AF078790-15|AAC26929.2|  352|Caenorhabditis elegans Hypothetical...    27   9.3  

>Z78420-6|CAB01711.2| 1243|Caenorhabditis elegans Hypothetical
           protein F45H11.4 protein.
          Length = 1243

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 22/48 (45%), Positives = 23/48 (47%)
 Frame = -1

Query: 289 ALLCCPN*NIFPKIPE*NIRVETTTTKLFRWLFK*SQ*YSDSDLLPEH 146
           ALL  P   I    PE NIR   TTTKL R  F  SQ   DS    +H
Sbjct: 833 ALLFFPKLYIILMHPEKNIRASYTTTKLIRCHFGNSQAAYDSTSKQQH 880


>Z78418-6|CAB01699.2| 1243|Caenorhabditis elegans Hypothetical
           protein F45H11.4 protein.
          Length = 1243

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 22/48 (45%), Positives = 23/48 (47%)
 Frame = -1

Query: 289 ALLCCPN*NIFPKIPE*NIRVETTTTKLFRWLFK*SQ*YSDSDLLPEH 146
           ALL  P   I    PE NIR   TTTKL R  F  SQ   DS    +H
Sbjct: 833 ALLFFPKLYIILMHPEKNIRASYTTTKLIRCHFGNSQAAYDSTSKQQH 880


>AF067216-2|AAC17527.2|  343|Caenorhabditis elegans Hypothetical
           protein C35E7.8 protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +2

Query: 359 ELYYSKLPRYVDYKSN 406
           ELY S++P+Y DY+SN
Sbjct: 108 ELYESQMPKYFDYQSN 123


>Z83233-4|CAB05758.1|  298|Caenorhabditis elegans Hypothetical
           protein K06B4.4 protein.
          Length = 298

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 378 CLGTWTTSLISVYALCAMYGD 440
           CL  W T L  + A CA++GD
Sbjct: 2   CLYLWKTMLFLIDAFCAIFGD 22


>U61947-14|ABA29341.1|  413|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 105, isoform b protein.
          Length = 413

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 3/24 (12%)
 Frame = +2

Query: 197 PTE*FSSSRFD---SNILFGYFRE 259
           PT  F+ S FD   SN++FGY+R+
Sbjct: 389 PTRVFNLSSFDPYSSNVIFGYYRD 412


>U61947-13|AAB03131.3|  429|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 105, isoform a protein.
          Length = 429

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 3/24 (12%)
 Frame = +2

Query: 197 PTE*FSSSRFD---SNILFGYFRE 259
           PT  F+ S FD   SN++FGY+R+
Sbjct: 405 PTRVFNLSSFDPYSSNVIFGYYRD 428


>AY204189-1|AAO39193.1|  429|Caenorhabditis elegans nuclear receptor
           NHR-105 protein.
          Length = 429

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 3/24 (12%)
 Frame = +2

Query: 197 PTE*FSSSRFD---SNILFGYFRE 259
           PT  F+ S FD   SN++FGY+R+
Sbjct: 405 PTRVFNLSSFDPYSSNVIFGYYRD 428


>AF078790-15|AAC26929.2|  352|Caenorhabditis elegans Hypothetical
           protein F36H12.2 protein.
          Length = 352

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +2

Query: 359 ELYYSKLPRYVDYKSN 406
           ELY S++P+Y +Y+SN
Sbjct: 77  ELYESQMPKYFEYQSN 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,033,365
Number of Sequences: 27780
Number of extensions: 189454
Number of successful extensions: 387
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)