Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_B06
         (569 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9RIY2 Cluster: Deoxiribopirymidine photolyase; n=1; St...    33   3.6  

>UniRef50_Q9RIY2 Cluster: Deoxiribopirymidine photolyase; n=1;
           Streptomyces coelicolor|Rep: Deoxiribopirymidine
           photolyase - Streptomyces coelicolor
          Length = 415

 Score = 33.5 bits (73), Expect = 3.6
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = -1

Query: 224 YRYGMRTGARRTSLYELCLQPAPLLTPPKTTHMVPILC---TDFQSPVTATTLYSMLFNK 54
           YR  MR  A  + L    + PAP+LTP  ++H V ++         P+T +  + ++  +
Sbjct: 66  YREMMRRHATVSGLRRRIIVPAPVLTPGLSSHWVGLVTPVPASIARPLTESLRHEVVCQE 125

Query: 53  HNLGRIV 33
           H++ R V
Sbjct: 126 HDIARYV 132


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 486,801,932
Number of Sequences: 1657284
Number of extensions: 8597613
Number of successful extensions: 20403
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 19848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20403
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38738010471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)