Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_B06
         (569 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0149 - 21278418-21278747,21279170-21279238,21279709-212797...    29   2.0  
09_02_0399 - 8569478-8569795,8570219-8570287,8570760-8570848,857...    28   4.6  
02_05_0626 - 30456714-30456829,30456951-30457023,30457136-304572...    28   4.6  
09_02_0150 - 5033342-5033806                                           28   6.0  

>03_05_0149 -
           21278418-21278747,21279170-21279238,21279709-21279797,
           21280395-21280467,21280846-21280917
          Length = 210

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = -1

Query: 455 LIISRRNVRLYYIVKNRKYQV*SKRYTSTIKL 360
           + I+ +NVR+ YIVK R+Y   ++ Y  T++L
Sbjct: 25  IYINVKNVRMTYIVKRREYINTTREYAYTMRL 56


>09_02_0399 -
           8569478-8569795,8570219-8570287,8570760-8570848,
           8571446-8571542,8571920-8571991
          Length = 214

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -1

Query: 476 FYSIFFLLIISRRNVRLYYIVKNRKYQV*SKRYTSTIKL 360
           + S F  + ++ +N R+ YIVK R+Y   ++ Y  T++L
Sbjct: 26  YLSRFININMNVKNARMTYIVKRREYINTTREYAYTMRL 64


>02_05_0626 -
           30456714-30456829,30456951-30457023,30457136-30457250,
           30457368-30457450,30457532-30457685,30457859-30458095,
           30458212-30458435,30458657-30458774,30459286-30459614
          Length = 482

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/39 (38%), Positives = 16/39 (41%)
 Frame = -2

Query: 181 TNCACNPRPSLRPRKRHTWFPYFALIFNLQ*PQRLCTLC 65
           TNCA  P P  +P K     P   L   LQ  Q  C  C
Sbjct: 145 TNCAKGPHPLYKPAKEKIVPPKDLLCQELQGNQNYCETC 183


>09_02_0150 - 5033342-5033806
          Length = 154

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +3

Query: 90  HWRLKISAKYG 122
           HWRL+ISAKYG
Sbjct: 3   HWRLEISAKYG 13


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,477,971
Number of Sequences: 37544
Number of extensions: 219099
Number of successful extensions: 518
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)