Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_B06
         (569 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)                    30   1.5  
SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)           29   2.0  
SB_24840| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_41561| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.28)           28   4.7  
SB_6965| Best HMM Match : EB (HMM E-Value=1.3)                         27   8.2  
SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 3255

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 143  PKTTHMVPILCTDFQSPVTATTLYSMLFNKH 51
            PK TH++ IL +D  + + A   +S+L N+H
Sbjct: 2013 PKETHVMRILASDADTGLNAELTFSLLSNEH 2043


>SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)
          Length = 328

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 79  LCTLCYLINTIWEELFNSSSYL 14
           LC LC +IN+ W++ F S+S L
Sbjct: 263 LCLLCSMINSCWKQPFQSTSAL 284


>SB_24840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 79  LCTLCYLINTIWEELFNSSSYL 14
           LC LC +IN+ W++ F S+S L
Sbjct: 263 LCLLCSMINSCWKQPFQSTSAL 284


>SB_41561| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.28)
          Length = 1643

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 168 ATRAPPYAPENDTHGSHTLH*FSISS 91
           A + P Y PE+DT GSH    F + S
Sbjct: 172 AAKGPFYQPEHDTEGSHVSRIFCLIS 197


>SB_6965| Best HMM Match : EB (HMM E-Value=1.3)
          Length = 514

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -3

Query: 246 ISLTLSKLSIRY--AYRRTTHFTLRTVPATRAPPYAPENDTHGSHTL 112
           +S+ + + S+R+   ++R   F  R VP +   PY  + D H +  L
Sbjct: 183 LSVAICQCSVRWLCGFKRVCRFVSRQVPTSDNLPYCGKMDDHANAVL 229


>SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 603

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 167 QPAPLLTPPKTTHMVPILCTDFQSPVTATTLYSML 63
           QP P + PP TT +   + T  + P T TT+ + +
Sbjct: 437 QPPPSIIPPPTTPLPQTVPTPPRPPTTMTTILTTI 471


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,168,350
Number of Sequences: 59808
Number of extensions: 270055
Number of successful extensions: 778
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)