Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_B05
         (418 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis...    32   0.19 
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis...    32   0.19 
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis...    32   0.19 
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis...    32   0.19 
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis...    32   0.19 
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res...    32   0.19 

>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
           resistance related protein1 protein.
          Length = 1540

 Score = 31.9 bits (69), Expect = 0.19
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -2

Query: 162 LLLKPKFINSLINISQLNLQNETLYICTK*IFTTLYIHNYLLWTPSNSLLSP 7
           L ++ K I  L  +S LN      + C   +   L    Y+LW P N++L+P
Sbjct: 502 LEVREKEIRVLKKLSYLNAATTLSWACAPFLVAVLTFGLYVLWDPENNVLTP 553


>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform e protein.
          Length = 1534

 Score = 31.9 bits (69), Expect = 0.19
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -2

Query: 162 LLLKPKFINSLINISQLNLQNETLYICTK*IFTTLYIHNYLLWTPSNSLLSP 7
           L ++ K I  L  +S LN      + C   +   L    Y+LW P N++L+P
Sbjct: 502 LEVREKEIRVLKKLSYLNAATTLSWACAPFLVAVLTFGLYVLWDPENNVLTP 553


>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform c protein.
          Length = 1534

 Score = 31.9 bits (69), Expect = 0.19
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -2

Query: 162 LLLKPKFINSLINISQLNLQNETLYICTK*IFTTLYIHNYLLWTPSNSLLSP 7
           L ++ K I  L  +S LN      + C   +   L    Y+LW P N++L+P
Sbjct: 502 LEVREKEIRVLKKLSYLNAATTLSWACAPFLVAVLTFGLYVLWDPENNVLTP 553


>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform b protein.
          Length = 1534

 Score = 31.9 bits (69), Expect = 0.19
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -2

Query: 162 LLLKPKFINSLINISQLNLQNETLYICTK*IFTTLYIHNYLLWTPSNSLLSP 7
           L ++ K I  L  +S LN      + C   +   L    Y+LW P N++L+P
Sbjct: 502 LEVREKEIRVLKKLSYLNAATTLSWACAPFLVAVLTFGLYVLWDPENNVLTP 553


>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform a protein.
          Length = 1528

 Score = 31.9 bits (69), Expect = 0.19
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -2

Query: 162 LLLKPKFINSLINISQLNLQNETLYICTK*IFTTLYIHNYLLWTPSNSLLSP 7
           L ++ K I  L  +S LN      + C   +   L    Y+LW P N++L+P
Sbjct: 502 LEVREKEIRVLKKLSYLNAATTLSWACAPFLVAVLTFGLYVLWDPENNVLTP 553


>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
           resistance-associatedprotein protein.
          Length = 1534

 Score = 31.9 bits (69), Expect = 0.19
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -2

Query: 162 LLLKPKFINSLINISQLNLQNETLYICTK*IFTTLYIHNYLLWTPSNSLLSP 7
           L ++ K I  L  +S LN      + C   +   L    Y+LW P N++L+P
Sbjct: 502 LEVREKEIRVLKKLSYLNAATTLSWACAPFLVAVLTFGLYVLWDPENNVLTP 553


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,756,121
Number of Sequences: 27780
Number of extensions: 126305
Number of successful extensions: 229
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)