Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_B04
(494 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1355 + 32851514-32851696,32852132-32852224,32852334-328524... 102 1e-22
04_04_1127 - 31098233-31098326,31099968-31100047,31100198-311003... 98 3e-21
02_05_0077 + 25645730-25645993,25647172-25647648,25648027-256482... 28 4.7
01_03_0196 - 13696056-13697448,13697676-13697713 28 4.7
09_02_0535 - 10346395-10346705,10347100-10347175,10348931-103490... 27 6.3
05_01_0458 + 3630218-3630274,3630383-3630507,3630635-3630710,363... 27 8.3
>04_04_1355 +
32851514-32851696,32852132-32852224,32852334-32852485,
32852702-32852837,32852947-32853102,32853233-32853312,
32853475-32853568
Length = 297
Score = 102 bits (245), Expect = 1e-22
Identities = 63/163 (38%), Positives = 93/163 (57%), Gaps = 5/163 (3%)
Frame = +3
Query: 21 DELFDVRNAFYVGNYQQAINEAQRINPS---SPLVALQRDVFLYRSYIAQGNHRIVLQEL 191
D LF +RN+FYVG YQ I Q I SP +RD LYRSYIA G+H++V+ E+
Sbjct: 8 DHLFGLRNSFYVGAYQAVITGVQAIPARAALSPDALAERDSLLYRSYIAIGSHQLVIDEI 67
Query: 192 -KTADPILQPLKSLVDYLSPGA-NKPAIVADIDARVAKGTELSNEVFHVVAATIYYYEDN 365
A LQ ++ L YLS GA K + + ++ +A SN + +VA T+ +E +
Sbjct: 68 GPGAATPLQAVRLLTVYLSGGAGGKESAIRKLNELLADDAVGSNPILRLVAGTVLMHERD 127
Query: 366 YEAALKIFHDIELVELRAYSIQCLLAMNRPDLARKELKLLQEL 494
Y ALK + +EL A ++Q L M+R D A K+L+++Q+L
Sbjct: 128 YAGALKHTNSGGTMELLAMNVQICLQMHRSDHAEKQLRIMQQL 170
>04_04_1127 -
31098233-31098326,31099968-31100047,31100198-31100353,
31100481-31100616,31101195-31101346,31102307-31102390,
31102495-31102656
Length = 287
Score = 98.3 bits (234), Expect = 3e-21
Identities = 54/159 (33%), Positives = 93/159 (58%), Gaps = 1/159 (0%)
Frame = +3
Query: 21 DELFDVRNAFYVGNYQQAINEAQRINPSSPLVALQRDVFLYRSYIAQGNHRIVLQEL-KT 197
D LF++RN FY+G YQ AIN + + A +RD ++RSY+A G++++V+ E+ +
Sbjct: 5 DLLFNLRNLFYLGAYQAAINNSD-VPGLDADAAAERDAIVFRSYVALGSYQLVISEIDSS 63
Query: 198 ADPILQPLKSLVDYLSPGANKPAIVADIDARVAKGTELSNEVFHVVAATIYYYEDNYEAA 377
A LQ +K L YLS +K + + + ++ SN V ++A I+ +E +Y A
Sbjct: 64 AATSLQAVKLLALYLS--GDKESAIVSLKEWLSDSAVGSNPVLRLIAGIIFMHEQDYTEA 121
Query: 378 LKIFHDIELVELRAYSIQCLLAMNRPDLARKELKLLQEL 494
LK H ++L A ++Q + M+R D A K+LK++Q++
Sbjct: 122 LKHTHSGGTLDLHALNVQIFIKMHRSDYAEKQLKIMQQI 160
>02_05_0077 +
25645730-25645993,25647172-25647648,25648027-25648237,
25648407-25648564,25648641-25648711,25648829-25648934,
25649008-25649094,25649701-25650252,25650337-25650403,
25650971-25651104,25651175-25651228,25651376-25651472,
25652007-25652212,25652287-25652367,25652543-25652608,
25653025-25653098,25653766-25653871
Length = 936
Score = 27.9 bits (59), Expect = 4.7
Identities = 18/55 (32%), Positives = 23/55 (41%)
Frame = +3
Query: 222 KSLVDYLSPGANKPAIVADIDARVAKGTELSNEVFHVVAATIYYYEDNYEAALKI 386
KSL++ G+ P + ID R+ E HVV A YY EA I
Sbjct: 321 KSLLNVFHDGSCHPGMALVIDDRLKVWDEKDQSRVHVVPAFTPYYAPQAEANCSI 375
>01_03_0196 - 13696056-13697448,13697676-13697713
Length = 476
Score = 27.9 bits (59), Expect = 4.7
Identities = 9/43 (20%), Positives = 24/43 (55%)
Frame = +3
Query: 351 YYEDNYEAALKIFHDIELVELRAYSIQCLLAMNRPDLARKELK 479
Y+ + ++++K HD + + + A + C+++ P L ++ K
Sbjct: 16 YHHPSIDSSVKPLHDYQQLLISAIGVNCIISQAAPKLTKRSDK 58
>09_02_0535 -
10346395-10346705,10347100-10347175,10348931-10349070,
10349294-10349578,10349677-10349718,10350963-10351461,
10351557-10351723,10352128-10352412,10352695-10352836
Length = 648
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +3
Query: 93 INPSSPLVALQRDVFLYRSYIAQGNHRIVLQELKTADPILQPLKSLVDYLSPGANK 260
I PSS + ++ D+F + N+ + +Q+L + I P + LS G N+
Sbjct: 188 IKPSSTWLNVEHDIFYREHGLNMTNYILSIQKLGSVKYISSPELGFLQSLSGGINR 243
>05_01_0458 +
3630218-3630274,3630383-3630507,3630635-3630710,
3630884-3630985,3631075-3631290,3632217-3632297,
3633152-3633235,3633405-3633509,3634338-3634516,
3634681-3634765,3634889-3635090,3635165-3635234,
3635353-3635422,3635745-3635834,3636020-3636088,
3636520-3636618,3636804-3636914
Length = 606
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/59 (23%), Positives = 31/59 (52%)
Frame = +3
Query: 129 DVFLYRSYIAQGNHRIVLQELKTADPILQPLKSLVDYLSPGANKPAIVADIDARVAKGT 305
++ L S++A+ +++ +KT PIL ++++D+ SP K V + + + T
Sbjct: 110 NIVLSNSWVAKRIQDMLVNGIKTWAPILPVKRAVLDFSSPNIAKEMHVGHLRSTIIGDT 168
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,445,869
Number of Sequences: 37544
Number of extensions: 250608
Number of successful extensions: 571
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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