Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_B04
         (494 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24897| Best HMM Match : Coatomer_E (HMM E-Value=4.2e-11)            66   2e-11
SB_58212| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-38)                 30   0.91 
SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.6  
SB_42680| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 29   2.8  
SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   4.9  
SB_4113| Best HMM Match : Homeobox (HMM E-Value=1.7e-05)               27   8.5  

>SB_24897| Best HMM Match : Coatomer_E (HMM E-Value=4.2e-11)
          Length = 155

 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 40/120 (33%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
 Frame = +3

Query: 15  DVDELFDVRNAFYVGNYQQAINEAQRINPSSPLVALQRDVFLYRSYIAQGNHRIVLQELK 194
           DVDELFDV+NAF++GNYQ  INEAQ+                      QG + +V+ E+ 
Sbjct: 6   DVDELFDVKNAFFIGNYQGCINEAQKF---------------------QGKYSVVMDEIS 44

Query: 195 -TADPILQPLKSLVDYLSPGANKPAIVADIDARVAKGTELSNEVFHVVAATIYYYEDNYE 371
             + P +QP++ L DYL   + +  I++ I+ ++   T   N+ + ++AA++Y++E   E
Sbjct: 45  GMSPPEVQPVRVLADYLQNPSRRDNILSSIEKKL--NTSDINDYYLLMAASVYFHEQGGE 102


>SB_58212| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-38)
          Length = 352

 Score = 30.3 bits (65), Expect = 0.91
 Identities = 14/61 (22%), Positives = 28/61 (45%)
 Frame = -1

Query: 371 FIIIFIVINSGSNYMKYLIR*LCTFCNPSINVCYYGRFICSRR*IIY*GFQRLKYRVSGL 192
           FI++ +V   GS+ + Y +     +C+ S+N   Y  +  + R       +R   R+  L
Sbjct: 254 FIVVSVVFTDGSHSVAYKLSYFLVYCSSSVNPLIYAYYSSNYRNAFSEVLERYSQRIRNL 313

Query: 191 Q 189
           +
Sbjct: 314 E 314


>SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 770

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 54  VGNYQQAINEAQRINPSSPLVALQRDVFLYRSYIAQGNH 170
           V +Y Q +N   +IN SSP+  L   V  YR      NH
Sbjct: 404 VNHYSQLVNRYPKINSSSPVTRLPLSVTRYRHSPLLVNH 442


>SB_42680| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 700

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +3

Query: 270 VADIDARVAKGTELSNEVFHVVAATIYYYEDNYEAALKIFHDIELVELRA 419
           + ++  +V+K +  +N + H    +    E   E A+K+ HD  + ELRA
Sbjct: 452 ILEVPEQVSKSSNFTNSLRHKSVWSTQN-EKGIEVAIKMLHDTSVTELRA 500


>SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 2353

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 455 RTVHGQQALYRVCSQLH*FNIVENFQSCFIIIFIVINSG 339
           R +H Q+A  RVC Q    N ++    CFI + + I  G
Sbjct: 551 RDIHVQKAK-RVCKQCEDSNTIDACDHCFIAVHLSIGHG 588


>SB_4113| Best HMM Match : Homeobox (HMM E-Value=1.7e-05)
          Length = 224

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +2

Query: 107 SLGSSSTRCFPLPFVYRSG*PPYCLARVEDR*PDTSTSEIPSRLF 241
           SLGS+   CFP P     G P YC     DR     + E+P+ +F
Sbjct: 156 SLGSTRMFCFPYP-----GSPRYCSTPPYDR--PAESKELPAYIF 193


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,560,789
Number of Sequences: 59808
Number of extensions: 294756
Number of successful extensions: 699
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1062812967
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)