Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_B04
         (494 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93382-3|CAB07613.1|  292|Caenorhabditis elegans Hypothetical pr...    88   4e-18
AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transport...    31   0.35 
Z54236-6|CAA90981.3|  465|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z34802-1|CAA84336.1|  531|Caenorhabditis elegans Hypothetical pr...    28   4.3  
AC024761-10|AAP13759.1|  501|Caenorhabditis elegans Cop-9 signal...    27   5.7  
U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical pr...    27   7.5  

>Z93382-3|CAB07613.1|  292|Caenorhabditis elegans Hypothetical
           protein F45G2.4 protein.
          Length = 292

 Score = 87.8 bits (208), Expect = 4e-18
 Identities = 53/160 (33%), Positives = 88/160 (55%), Gaps = 2/160 (1%)
 Frame = +3

Query: 21  DELFDVRNAFYVGNYQQAINEAQRINPSSPLVALQRDVFLYRSYIAQGNHRIVLQEL--K 194
           D+LF +RN F++G+YQ  I EA + +  +     ++DV+LYRSYIAQG   I L+E+   
Sbjct: 3   DKLFSIRNYFFLGSYQSCIGEALKFSSKNEEEKQEKDVYLYRSYIAQGQAFIPLKEIPAA 62

Query: 195 TADPILQPLKSLVDYLSPGANKPAIVADIDARVAKGTELSNEVFHVVAATIYYYEDNYEA 374
           T    L  ++   ++ +  A K  I+A++   VA    + +E+  V+AATI    D  + 
Sbjct: 63  TKSADLAAVRRYAEFRNNPAAKKKILAEVQEEVA-SRNIKSEIAAVLAATILNEADLSQD 121

Query: 375 ALKIFHDIELVELRAYSIQCLLAMNRPDLARKELKLLQEL 494
           A +     E +E RA  +  L+ MN+  LA  E+K + ++
Sbjct: 122 AFRAVSRFEGLEARASKVFILIKMNKRKLAIGEVKKMNQI 161


>AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transporter
            family protein 2 protein.
          Length = 1551

 Score = 31.5 bits (68), Expect = 0.35
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 327  HVVAATIYYYEDNYEAALKIFHDIELVELRAYSIQCLLAMNRPDL 461
            H V + ++     Y   + IF  + + ++RA     L  MNRPD+
Sbjct: 1075 HTVCSIVFLVLPQYNLGIAIFRGLMIYQVRAIGSNFLQQMNRPDM 1119


>Z54236-6|CAA90981.3|  465|Caenorhabditis elegans Hypothetical
           protein C27B7.6 protein.
          Length = 465

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +3

Query: 177 VLQELKTADPILQPLKSLVDYLSPGANKPAIVADIDARVAKGTELSNEV 323
           +L+ LKT   IL+PL  L++ ++P      +  DI  ++    + +NEV
Sbjct: 36  ILEVLKTIKEILEPLPCLIEIIAP----VVVFGDIHGQLGDLLQFTNEV 80


>Z34802-1|CAA84336.1|  531|Caenorhabditis elegans Hypothetical
           protein M88.1 protein.
          Length = 531

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 371 FIIIFIVINSGSNYMKYLIR*LCTFC 294
           FI+IFIV   G  +M+ +IR  C FC
Sbjct: 498 FIVIFIVFYIGYRFMRAVIR--CCFC 521


>AC024761-10|AAP13759.1|  501|Caenorhabditis elegans Cop-9
           signalosome subunit protein 3 protein.
          Length = 501

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
 Frame = +3

Query: 237 YLSPGANKPAIVADI----DARVAKGTELSNEVFHVVAATIYYYEDNYEAA-LKIFHDIE 401
           + SP     A+VA I    D   AK  E   +   V     Y  E+N+    LK+  +I 
Sbjct: 77  HCSPNVGSAAMVAAIKGMFDTSAAKNNETGTDRA-VELLNHYVDENNFVGGHLKLVPEII 135

Query: 402 LVELRAYSIQCLLAMNRPDLARK 470
              LR   + CL   N+P++ ++
Sbjct: 136 FPLLRDVGLYCLEKKNKPEIGQR 158


>U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical
           protein F41H10.3b protein.
          Length = 1005

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 306 ELSNEVFHVVAATIYYYEDNYEAAL 380
           E +NE+F ++A+ I Y  DN+ A++
Sbjct: 118 EDANELFRLIASCIIYSNDNWRASI 142


>U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical
           protein F41H10.3a protein.
          Length = 1140

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 306 ELSNEVFHVVAATIYYYEDNYEAAL 380
           E +NE+F ++A+ I Y  DN+ A++
Sbjct: 118 EDANELFRLIASCIIYSNDNWRASI 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,915,827
Number of Sequences: 27780
Number of extensions: 226058
Number of successful extensions: 613
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)