Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_B03
         (476 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    25   0.27 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   1.9  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   4.4  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    21   5.8  

>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 25.4 bits (53), Expect = 0.27
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 412 SDTFATLTTLNLTPGMSPTAWPVRPNPATNTSS 314
           +DT+ TL T  L  G     WP +P   T  SS
Sbjct: 52  TDTYPTLETCRLVCGKYGALWP-QPTSVTKISS 83


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +3

Query: 348 GHAVGDIPGVR 380
           G AVGD+PG+R
Sbjct: 62  GTAVGDVPGLR 72


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 308 GER*GVSCRIRSYRPRCW 361
           GE   V+C+  + +P CW
Sbjct: 869 GEYKCVTCKCENGKPTCW 886


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -2

Query: 313 FSSMWLRQPSRGTNAVTFLPFLMSCTRTHLRMAE 212
           F+ +W +  +RGT     LP   +C +  L +++
Sbjct: 3   FAELWKKIRNRGTPPKFELPTTHNCLKKVLLLSQ 36


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,690
Number of Sequences: 336
Number of extensions: 2753
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11141978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)