Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_B03
(476 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 241 2e-64
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 240 5e-64
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 151 4e-37
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 49 2e-06
09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293 31 0.48
06_02_0197 - 12912818-12913411,12913505-12913732 30 1.1
12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192 29 2.6
03_01_0522 - 3919120-3919696,3919835-3919919,3919955-3919985,392... 28 3.4
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140... 27 5.9
03_05_0300 - 22894282-22894628,22894713-22894809,22896062-228962... 27 5.9
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 27 7.8
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 241 bits (590), Expect = 2e-64
Identities = 110/149 (73%), Positives = 126/149 (84%)
Frame = +3
Query: 6 RVRAIVMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEK 185
R ++ MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK
Sbjct: 165 RCPSVNMGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEK 223
Query: 186 VGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRTGHAVGD 365
+G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGR GHAVGD
Sbjct: 224 IGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGD 283
Query: 366 IPGVRFKVVKVANVSLLALYKEQKERPRS 452
IPGVRFKVVKV+ VSLLAL+KE+KE+PRS
Sbjct: 284 IPGVRFKVVKVSGVSLLALFKEKKEKPRS 312
Score = 236 bits (578), Expect = 6e-63
Identities = 107/141 (75%), Positives = 121/141 (85%)
Frame = +3
Query: 24 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 203
MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 204 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRTGHAVGDIPGVRF 383
QPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGR GHAVGDIPGVRF
Sbjct: 60 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRF 119
Query: 384 KVVKVANVSLLALYKEQKERP 446
KVVKV+ VSLLAL+KE+KE+P
Sbjct: 120 KVVKVSGVSLLALFKEKKEKP 140
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 240 bits (587), Expect = 5e-64
Identities = 109/143 (76%), Positives = 123/143 (86%)
Frame = +3
Query: 24 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 203
MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 204 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRTGHAVGDIPGVRF 383
QPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGR GHAVGDIPGVRF
Sbjct: 60 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRF 119
Query: 384 KVVKVANVSLLALYKEQKERPRS 452
KVVKV+ VSLLAL+KE+KE+PRS
Sbjct: 120 KVVKVSGVSLLALFKEKKEKPRS 142
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 151 bits (365), Expect = 4e-37
Identities = 72/111 (64%), Positives = 82/111 (73%), Gaps = 1/111 (0%)
Frame = +3
Query: 6 RVRAIVMG-KPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLE 182
RVRA G K G+ RK HRR QRWADK +KK+H G WK PF G+SHAKGIVLE
Sbjct: 65 RVRAWSCGAKTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLE 123
Query: 183 KVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAG 335
K+G+EAKQPNSAI KC RVQL+KNGKK+ AFVP DGCLN I+EN+ V G
Sbjct: 124 KIGIEAKQPNSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKENEVAYVDG 174
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 48.8 bits (111), Expect = 2e-06
Identities = 21/27 (77%), Positives = 24/27 (88%)
Frame = +3
Query: 315 DEVLVAGFGRTGHAVGDIPGVRFKVVK 395
DEVL++GFG GHAVGDI GVRF+VVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293
Length = 352
Score = 31.1 bits (67), Expect = 0.48
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -2
Query: 397 TLTTLNLTPGMSPTAWPVRPNPATNTSSFSSMWLRQPSRGTNAV 266
TL+ LNL G SP P P P + SM + QP TN V
Sbjct: 254 TLSGLNLNLGSSPAMPPPPPPPPQSILQAMSMPMNQPRSTTNQV 297
>06_02_0197 - 12912818-12913411,12913505-12913732
Length = 273
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -3
Query: 240 VHEHTYEWLNSAAWLQRQLFRGRCP*HEMHHRR 142
V +H WL +A+ LQR +FR H++HH+R
Sbjct: 186 VDDHCGLWLPAASPLQR-VFRNNAAYHDVHHQR 217
>12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192
Length = 283
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 17 YR-NG*TSGYSHGAQARESSSRAAMGRQGIQKSP 115
YR +G +GY HG + + SSR + R G+ +P
Sbjct: 187 YRVHGMATGYCHGCRCQRCSSRPSRDRDGVAWAP 220
>03_01_0522 -
3919120-3919696,3919835-3919919,3919955-3919985,
3920078-3920158,3920271-3920338,3920645-3920698,
3921023-3922379
Length = 750
Score = 28.3 bits (60), Expect = 3.4
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -2
Query: 436 FCSLYRARS-DTFATLTTLNLTPGMSPTAWPVRPNPATNTSSFSSMWLRQPSRGT 275
FC R+ + TFAT + P ++P WPV +P S ++W P GT
Sbjct: 637 FCPSVRSLAMQTFATPGPILPGPPVTPMQWPVFISPPQQQLSACAVW---PQAGT 688
>03_06_0572 +
34812203-34812278,34812485-34813768,34813973-34814049,
34814299-34814646
Length = 594
Score = 27.5 bits (58), Expect = 5.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 391 TTLNLTPGMSPTAWPVRPNPATNTSS 314
TT TP M+P P P+P TN ++
Sbjct: 310 TTTTPTPFMNPVTAPTMPSPVTNPAT 335
>03_05_0300 -
22894282-22894628,22894713-22894809,22896062-22896200,
22896923-22897230
Length = 296
Score = 27.5 bits (58), Expect = 5.9
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = +3
Query: 294 LNHIEENDEVLVAGFGRTGHAVGDIPGVRFKVVKVANVSLLALYKEQKERPRS 452
L H+++ND V V+G + H V D G + K+ +V+ L +Q +RP++
Sbjct: 117 LKHLKQNDLVYVSGLLNSYHKV-DPSGEKHTFYKI-HVTDLNYVLDQNQRPQN 167
>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 27.1 bits (57), Expect = 7.8
Identities = 14/42 (33%), Positives = 17/42 (40%)
Frame = -2
Query: 379 LTPGMSPTAWPVRPNPATNTSSFSSMWLRQPSRGTNAVTFLP 254
LT + TAW V+P T TS+ S R N P
Sbjct: 1678 LTENLGVTAWDVQPEMQTTTSTLDSPSARMCPDNNNQTVHQP 1719
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,689,169
Number of Sequences: 37544
Number of extensions: 327444
Number of successful extensions: 993
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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