Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_B03
(476 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0) 217 5e-57
SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0) 173 6e-44
SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12) 36 0.023
SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13) 30 0.85
SB_48550| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_5218| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_19664| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_49238| Best HMM Match : Metallothionein (HMM E-Value=2.8) 28 3.4
SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_2709| Best HMM Match : SBP (HMM E-Value=0.83) 27 6.0
SB_41748| Best HMM Match : Transposase_14 (HMM E-Value=0.79) 27 6.0
SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35) 27 6.0
SB_33562| Best HMM Match : ATP-synt_8 (HMM E-Value=0.37) 27 7.9
SB_26951| Best HMM Match : CUB (HMM E-Value=0) 27 7.9
SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
>SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
Length = 413
Score = 217 bits (529), Expect = 5e-57
Identities = 97/116 (83%), Positives = 108/116 (93%)
Frame = +3
Query: 30 KPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQP 209
KPRG+RTARK +HRR+Q+W DK +KKAH+GT KANPFGGASHAKGIVLEKVGVEAKQP
Sbjct: 2 KPRGLRTARKLRSHRRDQKWHDKAYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQP 61
Query: 210 NSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRTGHAVGDIPGV 377
NSAIRKCVRVQLIKNGKK+TAFVP DGCLN+IEENDEVL++GFGR GHAVGDIPG+
Sbjct: 62 NSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLISGFGRRGHAVGDIPGI 117
>SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
Length = 143
Score = 173 bits (421), Expect = 6e-44
Identities = 80/91 (87%), Positives = 88/91 (96%)
Frame = +3
Query: 180 EKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRTGHAV 359
++ GVEAKQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN+IEENDEVL++GFGR GHAV
Sbjct: 53 QEPGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLISGFGRRGHAV 112
Query: 360 GDIPGVRFKVVKVANVSLLALYKEQKERPRS 452
GDIPGVRFKVVKVANVSLLAL+KE+KERPRS
Sbjct: 113 GDIPGVRFKVVKVANVSLLALFKEKKERPRS 143
>SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)
Length = 302
Score = 35.5 bits (78), Expect = 0.023
Identities = 16/39 (41%), Positives = 27/39 (69%)
Frame = +3
Query: 165 KGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVP 281
KG+ ++ + K+PNSA RKC ++L NGK ++A++P
Sbjct: 230 KGVCVKVFIRKPKKPNSAQRKCALLKL-SNGKTISAYIP 267
>SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)
Length = 943
Score = 30.3 bits (65), Expect = 0.85
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Frame = -2
Query: 154 APPKGFAFHLVPMW-AFLN-SLSAHR 83
APPKG+ F +VP+W +F N S+ HR
Sbjct: 911 APPKGYRFLIVPLWRSFSNRSVFGHR 936
>SB_48550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 595
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +2
Query: 8 GSRYRNG*TSGYSHGAQARESSSRAAMGRQGIQKS 112
G++ N T + G QARE++ R AM RQG++ +
Sbjct: 267 GNKLVNTRTGERAMGRQARENTFRRAMSRQGLENT 301
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 50 GAQARESSSRAAMGRQGIQKS 112
G QARE++ R AM RQG++ +
Sbjct: 2 GRQARENTFRRAMSRQGLENT 22
>SB_5218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 29.5 bits (63), Expect = 1.5
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -1
Query: 392 NHLKSDSRNVTNSVACTTESCN*HLIVLLNVVEATITRH 276
N + ++ N+ C T CN H + V E ++T+H
Sbjct: 283 NTTQCNTTQCCNTTQCNTTQCNKHSVTQYRVTEHSVTQH 321
>SB_19664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 632
Score = 28.7 bits (61), Expect = 2.6
Identities = 17/66 (25%), Positives = 28/66 (42%)
Frame = -2
Query: 382 NLTPGMSPTAWPVRPNPATNTSSFSSMWLRQPSRGTNAVTFLPFLMSCTRTHLRMAEFGC 203
N TP + P T+TSS + P++GT + P + T T L + C
Sbjct: 476 NPTPSVESDDMDYIPTKDTSTSSTGNQCSSVPTKGTKPMRPPPGFHALTTTQLTKTDDAC 535
Query: 202 LASTPT 185
++P+
Sbjct: 536 EPNSPS 541
>SB_49238| Best HMM Match : Metallothionein (HMM E-Value=2.8)
Length = 293
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -2
Query: 361 PTAWPVRPNPATNTSSFSSMWLRQPSRGTNA-VTFL 257
P W PN T S WL QP++GT+A VT+L
Sbjct: 138 PCTWLAPPNKGT---SAPVTWLAQPNKGTSAPVTWL 170
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 364 SPTAWPVRPNPATNTSSFSSMWLRQPSRGTNAV 266
+P W +PN T S WL P++GT+A+
Sbjct: 151 APVTWLAQPNKGT---SAPVTWLAPPNKGTSAI 180
>SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 468
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 107 KSPHGYEMEGEPLRWCISC*GHRPRKS 187
+S HG MEG P+ W +S G P+ S
Sbjct: 84 RSQHGTRMEGVPVCWYVSVWGLSPQVS 110
>SB_2709| Best HMM Match : SBP (HMM E-Value=0.83)
Length = 154
Score = 27.5 bits (58), Expect = 6.0
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 148 PKGFAFHLVPMWAFLNSLS 92
PKG+ F +VP+W+ L + S
Sbjct: 10 PKGYRFQIVPLWSSLTNRS 28
>SB_41748| Best HMM Match : Transposase_14 (HMM E-Value=0.79)
Length = 270
Score = 27.5 bits (58), Expect = 6.0
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 148 PKGFAFHLVPMWAFLNSLS 92
PKG+ F +VP+W+ L + S
Sbjct: 10 PKGYRFQIVPLWSSLTNRS 28
>SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)
Length = 1242
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/51 (29%), Positives = 21/51 (41%)
Frame = -2
Query: 406 TFATLTTLNLTPGMSPTAWPVRPNPATNTSSFSSMWLRQPSRGTNAVTFLP 254
T T L+ G S T+ PV+P P ++ +S L P LP
Sbjct: 55 TVQAATLLHSHNGPSVTSSPVQPKPVVTSTPYSGSDLSSPDENNGPQITLP 105
>SB_33562| Best HMM Match : ATP-synt_8 (HMM E-Value=0.37)
Length = 292
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Frame = -2
Query: 148 PKGFAFHLVPMW-AFLN-SLSAHR 83
PKG+ F +VP+W +F N S+ HR
Sbjct: 251 PKGYRFQIVPLWTSFSNRSVFGHR 274
>SB_26951| Best HMM Match : CUB (HMM E-Value=0)
Length = 794
Score = 27.1 bits (57), Expect = 7.9
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -2
Query: 334 PATNTSSFSSMWLRQPSRG-TNAVTFLPFLMSC--TRTHLRMAEFGC 203
P T TSS SSM+++ S G A F+ S TRT + +A F C
Sbjct: 711 PGTVTSSESSMYIKFHSNGNVTAAGFMATYTSAWSTRTIVLIAVFSC 757
>SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2353
Score = 27.1 bits (57), Expect = 7.9
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -2
Query: 325 NTSSFSSMWLRQPSRGTNAVTFLPFLM-SCTRTHLRMAEFGCLASTPTFSRTMPLA 161
NT FS + S G T F++ +CTR GC +STP +RT+ A
Sbjct: 1391 NTRLFSGLDKAITSSGRKPYTLYSFILKACTRA-------GCSSSTPASARTLEAA 1439
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,848,113
Number of Sequences: 59808
Number of extensions: 379192
Number of successful extensions: 1604
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1599
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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