Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_B03
         (476 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...   263   5e-71
Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical pr...    50   9e-07
U97008-3|AAB52308.1|  380|Caenorhabditis elegans Hypothetical pr...    28   3.0  
AF036693-4|AAK29786.1|  360|Caenorhabditis elegans Hypothetical ...    28   3.0  
Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z92782-8|CAB07185.1|  197|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score =  263 bits (644), Expect = 5e-71
 Identities = 118/143 (82%), Positives = 133/143 (93%)
 Frame = +3

Query: 24  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 203
           MGKP+G+ TARK   HR+EQRW DK +KKAH+GTRWK+NPFGGASHAKGIVLEK+GVEAK
Sbjct: 1   MGKPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAK 60

Query: 204 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRTGHAVGDIPGVRF 383
           QPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN +EENDEVLV+GFGR+GHAVGDIPGVRF
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRF 120

Query: 384 KVVKVANVSLLALYKEQKERPRS 452
           K+VKVAN SL+AL+K +KERPRS
Sbjct: 121 KIVKVANTSLIALFKGKKERPRS 143


>Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical
           protein T03D8.2 protein.
          Length = 157

 Score = 50.0 bits (114), Expect = 9e-07
 Identities = 28/62 (45%), Positives = 40/62 (64%)
 Frame = +3

Query: 150 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLV 329
           G SH KGIVL+ V    K+PNS  RKC  V+L   G +V A++P  G  ++++E+ +VLV
Sbjct: 72  GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL-STGAEVCAYIPNVG--HNLQEHSQVLV 128

Query: 330 AG 335
            G
Sbjct: 129 KG 130


>U97008-3|AAB52308.1|  380|Caenorhabditis elegans Hypothetical
           protein C03G6.8 protein.
          Length = 380

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = +1

Query: 412 F*LCTKNRRRGPGH 453
           F LC KNRR GPGH
Sbjct: 320 FDLCRKNRRDGPGH 333


>AF036693-4|AAK29786.1|  360|Caenorhabditis elegans Hypothetical
           protein C49A9.6 protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 8/77 (10%)
 Frame = +3

Query: 21  VMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFG--------GASHAKGIV 176
           V  K   +  + KH  H  +  + D  FKK   GTRW    +G        G  + +G +
Sbjct: 235 VDSKTESLFVSNKH--HLEQGHFFDGNFKKNADGTRWTCQNYGQPVEQLAEGGINQRGKI 292

Query: 177 LEKVGVEAKQPNSAIRK 227
              V +E  QP    RK
Sbjct: 293 FFTVKIENFQPARGNRK 309


>Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical
           protein T23D8.9a protein.
          Length = 811

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 267 TAFVPRDGCLNHIEEN 314
           T FVP+DG LN I+EN
Sbjct: 653 TPFVPKDGVLNVIDEN 668


>Z92782-8|CAB07185.1|  197|Caenorhabditis elegans Hypothetical
           protein F14F8.9 protein.
          Length = 197

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +3

Query: 291 CLNHIEENDEVLVAGFGRTGHAVGDIPGVRFKVVKV 398
           C N + E+DEV+    G+  H+   +P +  K++++
Sbjct: 129 CKNKLIEHDEVVTLIIGKGNHSRHQVPVIYNKLIEI 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,984,630
Number of Sequences: 27780
Number of extensions: 259211
Number of successful extensions: 707
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)