Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_B02
(557 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 303 1e-81
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 303 2e-81
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 215 1e-74
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 275 4e-73
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 241 8e-63
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 227 2e-58
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 225 4e-58
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 222 4e-57
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 126 1e-55
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 198 9e-50
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 192 4e-48
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 161 1e-38
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 116 5e-25
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 110 2e-23
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 107 2e-22
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 107 2e-22
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 105 9e-22
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 103 3e-21
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 101 2e-20
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 93 3e-18
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 92 7e-18
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 88 1e-16
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 86 5e-16
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 86 5e-16
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 85 8e-16
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 85 1e-15
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 85 1e-15
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 78 2e-13
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 78 2e-13
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 77 2e-13
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 71 2e-11
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 69 1e-10
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 65 1e-09
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 45 0.001
UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108, w... 40 0.030
UniRef50_A5NNX2 Cluster: Putative uncharacterized protein; n=1; ... 35 1.5
UniRef50_UPI0000F32FE2 Cluster: UPI0000F32FE2 related cluster; n... 34 2.0
UniRef50_A6GEF6 Cluster: Hydrolase, alpha/beta fold family prote... 34 2.6
UniRef50_Q4T5C4 Cluster: Chromosome undetermined SCAF9327, whole... 33 3.4
UniRef50_Q8S3P7 Cluster: Putative uncharacterized protein 24K23.... 33 4.5
UniRef50_UPI0000D9F43D Cluster: PREDICTED: hypothetical protein;... 33 6.0
UniRef50_Q03C76 Cluster: Predicted membrane protein; n=1; Lactob... 33 6.0
UniRef50_A5ZHX4 Cluster: Putative uncharacterized protein; n=1; ... 33 6.0
UniRef50_A0VDJ9 Cluster: PE-PGRS family protein; n=1; Delftia ac... 33 6.0
UniRef50_A0A7M3 Cluster: Putative uncharacterized protein; n=1; ... 33 6.0
UniRef50_Q0U2Z5 Cluster: Putative uncharacterized protein; n=1; ... 33 6.0
UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1; Acantha... 33 6.0
UniRef50_UPI0000E212EB Cluster: PREDICTED: hypothetical protein;... 32 7.9
UniRef50_Q9AAE0 Cluster: ISCc2, transposase, fusion; n=1; Caulob... 32 7.9
UniRef50_Q3W7E3 Cluster: Putative uncharacterized protein; n=1; ... 32 7.9
UniRef50_Q1NH40 Cluster: TonB-dependent receptor; n=1; Sphingomo... 32 7.9
UniRef50_Q095T8 Cluster: Radical SAM:Molybdenum cofactor synthes... 32 7.9
UniRef50_Q381Q5 Cluster: Putative uncharacterized protein; n=1; ... 32 7.9
UniRef50_Q05223 Cluster: Major head protein Gp17; n=5; Siphoviri... 32 7.9
UniRef50_Q59046 Cluster: DNA topoisomerase 1; n=6; Methanococcal... 32 7.9
UniRef50_Q95108 Cluster: Thioredoxin, mitochondrial precursor; n... 32 7.9
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 303 bits (745), Expect = 1e-81
Identities = 136/173 (78%), Positives = 153/173 (88%)
Frame = +2
Query: 38 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 217
MARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+E
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 218 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 397
V KI QR IK+DGKVRTD TYPAGFMDV+SI+KT E FRLIYD KGRF +HRITPEEAK
Sbjct: 61 VKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAK 120
Query: 398 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFI 556
YKLCKVR++ G K +P+LVTHD RT+RYPDPLIKVND++Q+D+ T KI DFI
Sbjct: 121 YKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFI 173
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 303 bits (743), Expect = 2e-81
Identities = 137/173 (79%), Positives = 154/173 (89%)
Frame = +2
Query: 38 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 217
MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E
Sbjct: 1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60
Query: 218 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 397
V KIV QRL+KVDGKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAK
Sbjct: 61 VTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAK 120
Query: 398 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFI 556
YKLCKV++ G K VP+LVTHDGRT+RYPDPLI NDSVQ+DI++ KI D+I
Sbjct: 121 YKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYI 173
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 215 bits (525), Expect(2) = 1e-74
Identities = 99/119 (83%), Positives = 107/119 (89%)
Frame = +2
Query: 41 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 220
ARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV
Sbjct: 2 ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEV 61
Query: 221 LKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 397
KI QR IK+DGKVRTD TYP GFMDV+SI+KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 62 KKICMQRFIKIDGKVRTDITYPTGFMDVISIDKTGEHFRLIYDVKGRFTVHRITAEEAK 120
Score = 87.4 bits (207), Expect(2) = 1e-74
Identities = 35/54 (64%), Positives = 46/54 (85%)
Frame = +2
Query: 395 KYKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFI 556
+YKLCKV+++ G K +P+LVTHD RT+RYPDPLIKVND+V++D+ T KI DFI
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITDFI 205
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 275 bits (675), Expect = 4e-73
Identities = 125/173 (72%), Positives = 146/173 (84%)
Frame = +2
Query: 38 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 217
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Query: 218 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 397
V+ I+ QR I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK
Sbjct: 61 VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120
Query: 398 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFI 556
+KLCKVR + G K +PYL T+DGRT+RYPDPLIK ND+++LD+ NKI++FI
Sbjct: 121 FKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFI 173
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 241 bits (590), Expect = 8e-63
Identities = 103/173 (59%), Positives = 135/173 (78%)
Frame = +2
Query: 38 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 217
MARGP+ HLKRLNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G E
Sbjct: 1 MARGPRHHLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGRE 60
Query: 218 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 397
V IVK R IK+DGK+RTD YP GFMDV+SI +T E FRL+Y+ K RF + +T E+AK
Sbjct: 61 VTMIVKNRTIKIDGKIRTDTRYPVGFMDVLSIPRTKENFRLMYNTKRRFCLVPLTAEQAK 120
Query: 398 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFI 556
+KLCK+ + G ++PY+VTHDGRT+RYP P ++ ND+++L++ T KI+DF+
Sbjct: 121 FKLCKIEKRVLGTGAIPYIVTHDGRTIRYPHPELQANDTIKLNLETGKIVDFV 173
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 227 bits (554), Expect = 2e-58
Identities = 108/169 (63%), Positives = 130/169 (76%)
Frame = +2
Query: 38 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 217
+A GPK+HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALTG+E
Sbjct: 12 VAFGPKQHLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLPH-IFLRNRLKYALTGDE 70
Query: 218 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 397
V KI Q IKVDGK+RTD P MDV+SI+K E F LIY + RF +HRITPEE K
Sbjct: 71 VKKICMQWFIKVDGKIRTDNNLPYWIMDVISIDKMGEDFCLIYGINRRFALHRITPEEVK 130
Query: 398 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKI 544
YKLCK+R++ K +P+LV HD T+R+PD LIKVND++Q+D+ T KI
Sbjct: 131 YKLCKMRKIFVRAKGIPHLVIHDIHTVRHPDSLIKVNDTIQIDLETGKI 179
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 225 bits (551), Expect = 4e-58
Identities = 101/173 (58%), Positives = 134/173 (77%)
Frame = +2
Query: 38 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 217
M+RG KKH KRLNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E
Sbjct: 1 MSRGIKKHYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRE 60
Query: 218 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 397
L I+K+ I VDGKVR D +PAG MDV+SI+ T E +R++YD G F +HRIT +E+
Sbjct: 61 SLNILKKNEIYVDGKVRADKNFPAGVMDVISIKTTKENYRVLYDNVGHFFLHRITIKESM 120
Query: 398 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFI 556
+KLCKV RV+ G K +PY+VTHDGRT+R+P+ LIK NDS+ LD+ NK++DFI
Sbjct: 121 FKLCKVIRVSIGSKGIPYIVTHDGRTIRFPNLLIKSNDSIVLDLLNNKVIDFI 173
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 222 bits (543), Expect = 4e-57
Identities = 101/182 (55%), Positives = 133/182 (73%)
Frame = +2
Query: 11 SFLFKVLFNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNR 190
SF + VLF M R + HLKRL AP W+L K G +A PSTGPHKLRECLP+ IFLR+R
Sbjct: 6 SFSWSVLFLMPRCQRFHLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDR 65
Query: 191 LKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTI 370
LKYALT E + IVK+RL+KVDGKVRT+ YP G MDV+ + K+NELFR+IYD KGRF +
Sbjct: 66 LKYALTAKEAVAIVKRRLVKVDGKVRTNYRYPTGLMDVIELGKSNELFRIIYDCKGRFCV 125
Query: 371 HRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMD 550
H I +EA +KL +V + G K +P++VTHDGRT+ Y DP ++V+D+++ +I T ++
Sbjct: 126 HHIEAKEASFKLLRVNQFKIGAKGIPHVVTHDGRTISYVDPSVRVHDALKFNIKTGEVES 185
Query: 551 FI 556
I
Sbjct: 186 VI 187
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 126 bits (303), Expect(2) = 1e-55
Identities = 57/75 (76%), Positives = 63/75 (84%)
Frame = +2
Query: 38 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 217
MA P+KHLK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+E
Sbjct: 1 MAHSPRKHLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 218 VLKIVKQRLIKVDGK 262
V KI Q IK+DGK
Sbjct: 61 VKKIRMQHFIKMDGK 75
Score = 113 bits (272), Expect(2) = 1e-55
Identities = 47/69 (68%), Positives = 58/69 (84%)
Frame = +2
Query: 347 DVKGRFTIHRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLD 526
D KGRF +HRITPEEAKYKL KVR++ G K +P+LVTHD RT+RYPDPLIK+ND++Q+D
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135
Query: 527 ISTNKIMDF 553
+ T KI DF
Sbjct: 136 LETGKITDF 144
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 198 bits (482), Expect = 9e-50
Identities = 93/168 (55%), Positives = 114/168 (67%)
Frame = +2
Query: 53 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 232
KKHLKRL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E I+
Sbjct: 3 KKHLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMIL 62
Query: 233 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 412
+Q L+ VD R D YPAGFMDVV I KT + FRL+YDVKGRF + ++ EA+ KL K
Sbjct: 63 RQGLVHVDNHPRRDGKYPAGFMDVVEIPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMK 122
Query: 413 VRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFI 556
V + T VP VTHDG +RYPDP + D++ ++ K +D I
Sbjct: 123 VVNLYTATGRVPVAVTHDGHRIRYPDPHTSIGDTIVYNVKEKKCVDLI 170
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 192 bits (469), Expect = 4e-48
Identities = 103/211 (48%), Positives = 135/211 (63%), Gaps = 31/211 (14%)
Frame = +2
Query: 14 FLFKVLFNMARGPKKHLKRLNAPKAWMLD-------------------------KLGGVY 118
F F++ + ARGPKKHLKR+NAPK+WML+ KL +Y
Sbjct: 75 FSFEI-YKKARGPKKHLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFIY 133
Query: 119 ----APRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV--KQRLIKVDGKVRTDPT 280
A RPS GPHKLRE LPL + L+ RL YAL G +V I+ K++ + VDGKVR D
Sbjct: 134 FKKQATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKG 193
Query: 281 YPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVRRVATGPKSVPYLVT 460
YP G MDVV IEKT++ FR++YD KGRF + ++ EEAKYKL KV A GP +PY+VT
Sbjct: 194 YPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVT 253
Query: 461 HDGRTLRYPDPLIKVNDSVQLDISTNKIMDF 553
HD RT+R+P+P IK+ D+++ D+ NKI +F
Sbjct: 254 HDSRTIRFPNPEIKIGDTLKYDLVNNKIENF 284
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 161 bits (391), Expect = 1e-38
Identities = 75/173 (43%), Positives = 116/173 (67%)
Frame = +2
Query: 38 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 217
M G + HLKR APK+WMLDK GG +A P++GPHK EC+PL + L+YA E
Sbjct: 1 MPTGHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKE 60
Query: 218 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 397
+ I+ ++ IKV+G+VRT+ +P G DVVSIEKT E FR++Y+V +F +HRI+ EEA
Sbjct: 61 LSIILAEKNIKVNGRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEAS 120
Query: 398 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFI 556
Y+L KV + + +PY+V+ G ++R+ DP I + ++++ T+K++++I
Sbjct: 121 YRLTKVTKKYEN-QGIPYIVSSCGLSIRFCDPAIDLGYTIKISNETSKVIEYI 172
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 116 bits (278), Expect = 5e-25
Identities = 57/143 (39%), Positives = 85/143 (59%), Gaps = 1/143 (0%)
Frame = +2
Query: 47 GPKKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 223
GPK+H+KRL AP AW + K GG +APRP GPH + +PL+I +R+ L YA E
Sbjct: 7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREAR 66
Query: 224 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 403
KI+ + I VDG VR +P +P G MDVV I +T + +R++ + R + I+ EEA+ K
Sbjct: 67 KIITRGEIYVDGVVRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVK 126
Query: 404 LCKVRRVATGPKSVPYLVTHDGR 472
+C+++ + HDG+
Sbjct: 127 VCRIKNKTYVRGGNLQITMHDGK 149
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 110 bits (264), Expect = 2e-23
Identities = 59/171 (34%), Positives = 95/171 (55%)
Frame = +2
Query: 44 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 223
+GP+KHLKRL AP W L + + RPS GPH + + LPL++ +R+ LKYA E
Sbjct: 4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAK 63
Query: 224 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 403
KI++ I +DG R + +PAG MDV+SI + +E + +++D GR ++ + ++ K
Sbjct: 64 KIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDETYLVLFDESGRISLKK--TDKTDVK 121
Query: 404 LCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFI 556
LCK+ L HDGR + ++KV+D+ + + K D +
Sbjct: 122 LCKIVNKTVVKGGNIQLNLHDGR-----NQIVKVSDAAKAEEDVYKTGDSV 167
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 107 bits (256), Expect = 2e-22
Identities = 55/166 (33%), Positives = 87/166 (52%)
Frame = +2
Query: 47 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 226
G +KHLK APK W + + +PS G H + L L + +R+ LK A E +
Sbjct: 5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKR 64
Query: 227 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKL 406
I+ + VDG+V D +P GFMD++ I KT E++R++ D KGR +++I EE KL
Sbjct: 65 IINSGNVLVDGRVIKDYKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKL 122
Query: 407 CKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKI 544
CK+ +T + HDG+ + + V D + L + ++I
Sbjct: 123 CKIVNKSTIKGGKIQVNLHDGKNVIIDENDYNVGDVIDLKVPDHEI 168
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 107 bits (256), Expect = 2e-22
Identities = 65/166 (39%), Positives = 86/166 (51%), Gaps = 4/166 (2%)
Frame = +2
Query: 59 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 235
HL+R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA T +E I+
Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIIS 62
Query: 236 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 415
+ +KVDG VR D +P G MDV+ I T E++R++ D + + I+ EEA KL +V
Sbjct: 63 RGYVKVDGVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRV 122
Query: 416 RRVATGPKSVPYLVTHDGR---TLRYPDPLIKVNDSVQLDISTNKI 544
L HDGR T IK DSV D+ I
Sbjct: 123 EGKTMVKGGRIQLHFHDGRNLITTLEAGKQIKTFDSVLYDLRNKAI 168
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 105 bits (251), Expect = 9e-22
Identities = 54/145 (37%), Positives = 79/145 (54%)
Frame = +2
Query: 44 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 223
+G +HL+R AP W + + V+ +PS GPH L +P+ I LR+ YA T E
Sbjct: 6 KGSLRHLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKTMKEAR 65
Query: 224 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 403
+I+ R+I+VDG+V TD +P G MDV+ I + +R++ D + I PEEA YK
Sbjct: 66 RILASRVIEVDGRVVTDYKFPVGLMDVLHIIPEEKYYRVVPDPARKLRFVEIKPEEAGYK 125
Query: 404 LCKVRRVATGPKSVPYLVTHDGRTL 478
L ++RR T HDGR +
Sbjct: 126 LAQIRRKMTVKNGDLQFTLHDGRNV 150
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 103 bits (247), Expect = 3e-21
Identities = 62/162 (38%), Positives = 86/162 (53%), Gaps = 4/162 (2%)
Frame = +2
Query: 38 MAR-GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGN 214
MAR G ++ LK L AP+ W + + +A +P GPH + LPL++ +RN L YA T
Sbjct: 1 MARMGGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAR 60
Query: 215 EVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLI-YDVKGRFTIHRITPEE 391
E K++ + +VDG VR D +P GFMDV+ + T E FR++ Y VK F +H I EE
Sbjct: 61 EARKLISEGHFRVDGVVRKDYKFPVGFMDVIEVVDTGEKFRMLPYPVK-FFKLHPIPEEE 119
Query: 392 AKYKLCKVRRVATGPKSVPYLVTHDGRTL--RYPDPLIKVND 511
K ++ T L HDGR + R DP V D
Sbjct: 120 GDLKPVRIENKTTVKGGHVQLNLHDGRNILVRVKDPRNPVED 161
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 101 bits (241), Expect = 2e-20
Identities = 55/168 (32%), Positives = 85/168 (50%), Gaps = 3/168 (1%)
Frame = +2
Query: 59 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 238
HL+R +P+ W +++ G ++ +PS GPH +PL + LR+ YA T E I+ +
Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGK 62
Query: 239 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVR 418
+KVDGKVR D YP G MDV+ + NE +R+I D RI EA K+C++
Sbjct: 63 GYVKVDGKVRRDYKYPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIE 122
Query: 419 RVATGPKSVPYLVTHDGRTL---RYPDPLIKVNDSVQLDISTNKIMDF 553
L HDGR + + + SV +++ K+MD+
Sbjct: 123 DKTMVKAGKIQLNLHDGRNIIVDQDEGRKYETLGSVVVNLEDGKLMDY 170
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 93.5 bits (222), Expect = 3e-18
Identities = 54/162 (33%), Positives = 81/162 (50%)
Frame = +2
Query: 59 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 238
HLKR+ AP+ W + + + +P G H +PLV+ LR+ LK A +E+ KI+ +
Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHE 64
Query: 239 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVR 418
+ VDGKVR D Y G D +SI N +R++ + G+F H + +A K+CK+
Sbjct: 65 GKVLVDGKVRKDYRYTVGMFDTISIPAINANYRVVIGMDGKF--HLVPVTDASAKICKIV 122
Query: 419 RVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKI 544
L HDG T+ + K DSV L + KI
Sbjct: 123 NKTALRGGKIQLNLHDGTTMIASND-YKTKDSVILKMPERKI 163
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 92.3 bits (219), Expect = 7e-18
Identities = 55/170 (32%), Positives = 89/170 (52%), Gaps = 2/170 (1%)
Frame = +2
Query: 53 KKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 229
K+HL+ L P+ W + K G + +PS GPH +P+ ++LR+ L A EV +
Sbjct: 6 KRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYL 65
Query: 230 VKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLC 409
+ + VDG+ D +P G DV++I + NE +R++ D +G+ + +I EEA K
Sbjct: 66 LNNGKVLVDGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYG 125
Query: 410 K-VRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFI 556
K +R+V+ + Y +T DGRT D K + V +I KI + I
Sbjct: 126 KIIRKVSVRGGKIQYTLT-DGRTF-LGDNSYKTHYGVVYEIPNFKIREVI 173
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 87.8 bits (208), Expect = 1e-16
Identities = 46/144 (31%), Positives = 75/144 (52%)
Frame = +2
Query: 59 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 238
H+KRL P++W L + ++ +P+ G H C+PL + LR+ L A E +++
Sbjct: 5 HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLAT 64
Query: 239 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVR 418
R + VDG++ TD G MDV+++ + + FR I DV G+ I+ + A KLC+V
Sbjct: 65 RQVLVDGRIETDLGRGVGLMDVLTVGE--DSFRCILDVNGKLRYRSISDKAAASKLCRVM 122
Query: 419 RVATGPKSVPYLVTHDGRTLRYPD 490
+T + HDGR + D
Sbjct: 123 GKSTITDGKTQIHLHDGRNILVSD 146
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 86.2 bits (204), Expect = 5e-16
Identities = 47/170 (27%), Positives = 83/170 (48%)
Frame = +2
Query: 38 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 217
MA+G KKH KR+++ K G++ + S+GPH + + L+ ++ A E
Sbjct: 1 MAKGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQE 60
Query: 218 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 397
K+VK + V+GK +P MD +S N+ +R++ G+ T++ I E
Sbjct: 61 AQKVVKTGFLYVNGKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKD 120
Query: 398 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIM 547
K+CKV ++ ++T D R L+ IKV DS+ + ++I+
Sbjct: 121 LKICKVIKIINASSKNKIIITDDLRELKINYAKIKVEDSLLIKTINDEIV 170
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 86.2 bits (204), Expect = 5e-16
Identities = 52/164 (31%), Positives = 80/164 (48%)
Frame = +2
Query: 65 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 244
KRL + + + + P P+ G H + + L+ +R+ LK + E +I+ L
Sbjct: 6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGL 65
Query: 245 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVRRV 424
+KVDGK + + GFMDV+ I E +R++Y+ +G + + T E A KL KVR
Sbjct: 66 VKVDGKTVREKKFAVGFMDVIEIN--GESYRVVYNDQGALVLMKETKERASMKLLKVRSK 123
Query: 425 ATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFI 556
P + L THDGRT D KV D + + KI + I
Sbjct: 124 VIAPGNRIQLGTHDGRTFITDDKSKKVGDVWAVSVPDMKISEII 167
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 85.4 bits (202), Expect = 8e-16
Identities = 51/140 (36%), Positives = 68/140 (48%)
Frame = +2
Query: 59 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 238
H+ R AP + K + R GPHK++E +PL I L+ LK T E +I+
Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFD 62
Query: 239 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVR 418
+ VDGKVR D YP G MDVV I + R+I D T I+ E+AKYK ++
Sbjct: 63 GKVLVDGKVRRDYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIM 122
Query: 419 RVATGPKSVPYLVTHDGRTL 478
T V L DGR +
Sbjct: 123 NKTTLKSGVLQLNLEDGRNI 142
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 85.0 bits (201), Expect = 1e-15
Identities = 54/161 (33%), Positives = 79/161 (49%)
Frame = +2
Query: 56 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 235
K+LKRL AP +W + K + + + GPH LP+ ++LR + A +EV KI+
Sbjct: 3 KYLKRLVAPGSWHIPKKVQKFVMKTAPGPHNAG-ALPVGVWLREHIGLAQNASEVKKILH 61
Query: 236 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 415
QR + V+G+ D G D+VSI K + +R+ DVKG I E AK +LCK+
Sbjct: 62 QRDVLVNGRACKDSRMGLGVFDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKI 121
Query: 416 RRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTN 538
R T L G + D K DSV + + T+
Sbjct: 122 RNKTTVKGGKVQLNFAFGANV-LADNTYKAKDSVVVTLGTD 161
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 84.6 bits (200), Expect = 1e-15
Identities = 43/140 (30%), Positives = 70/140 (50%)
Frame = +2
Query: 59 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 238
H KRL+ PK+W + + G + GPH LPL + +R+ LK E +I+ +
Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSE 62
Query: 239 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVR 418
+ VDG R D +P G DV+++ NE +R++ D KGR ++++ E KLC++
Sbjct: 63 GKVLVDGISRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLN-ETNVNKLCRIN 121
Query: 419 RVATGPKSVPYLVTHDGRTL 478
T L +DG +
Sbjct: 122 NKTTVKGGKIQLNLNDGTNI 141
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 77.8 bits (183), Expect = 2e-13
Identities = 41/139 (29%), Positives = 73/139 (52%), Gaps = 1/139 (0%)
Frame = +2
Query: 65 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 244
K + A + + + ++ P+ H + +P++I LR+ LK E+ +I+ +
Sbjct: 7 KIMMASRKLKIPRKTNFWSVTPTPATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNM 66
Query: 245 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VRR 421
+KVDG++ D +P GFMDV+SI+ + ++YD KG+ I + P KL K V++
Sbjct: 67 VKVDGRIVKDRRFPVGFMDVLSIDTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFKVVKK 126
Query: 422 VATGPKSVPYLVTHDGRTL 478
G + L HDG+T+
Sbjct: 127 TIIGTGKI-QLGFHDGKTI 144
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 77.8 bits (183), Expect = 2e-13
Identities = 40/122 (32%), Positives = 66/122 (54%)
Frame = +2
Query: 65 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 244
KR+ AP AW + + Y S+GPH LP+ I+LR+ +++AL EV KI+ R
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQ 63
Query: 245 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVRRV 424
+ ++G + TD D++S K ++ + ++ D KGR + I+ + AK +L KV
Sbjct: 64 VLLNGHIVTDEHIGIDVFDIISFPKIDKHYMILVDEKGRHNEYEISADAAKLQLVKVANK 123
Query: 425 AT 430
T
Sbjct: 124 TT 125
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 77.4 bits (182), Expect = 2e-13
Identities = 42/166 (25%), Positives = 78/166 (46%)
Frame = +2
Query: 59 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 238
H KR++ PK+W + K + GPH + +PL + LR+ L E +++ +
Sbjct: 4 HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSE 63
Query: 239 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVR 418
+ VDG R D +P G MD+++I N +R++ D K R ++++ A KLC++
Sbjct: 64 GNVLVDGVARKDLRFPVGLMDIITIPLNNVEYRVMLDGKSRLVLNKLDGTGAD-KLCRIE 122
Query: 419 RVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFI 556
+ + + +DG + DS+ L + K++ I
Sbjct: 123 GKTSIKEGKIQMRLNDGVNI-IGSNNYNTKDSIILSVPDKKVVKHI 167
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 70.9 bits (166), Expect = 2e-11
Identities = 41/144 (28%), Positives = 67/144 (46%)
Frame = +2
Query: 59 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 238
H KRL+ P +W +++ + + GPH +PL+I LR+ L YA E + +
Sbjct: 4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNE 62
Query: 239 RLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVR 418
+ ++GK +D P G D+++ + E +R+ GR + I P+ A+ KL K+
Sbjct: 63 DNVLINGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIV 122
Query: 419 RVATGPKSVPYLVTHDGRTLRYPD 490
L HDG TL D
Sbjct: 123 TKTHVSGGDVQLGLHDGETLIVED 146
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 68.5 bits (160), Expect = 1e-10
Identities = 45/164 (27%), Positives = 71/164 (43%)
Frame = +2
Query: 56 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 235
K LKR AP W + + G + G H +P + LR+ L T E K +
Sbjct: 8 KKLKRQMAPSFWGITRKGKRFVVTVHPGAHSKHRSIPSAVLLRDTLGAVSTLREAKKSIY 67
Query: 236 QRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 415
++VDG RT + G MDVV + T +++R++ +I E K+C+V
Sbjct: 68 SGNVEVDGVKRTSLHHGIGLMDVVELGGTGDIYRMVPSGGAILKPVKIEAAEKDRKICRV 127
Query: 416 RRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIM 547
+ + HDGR+L D + V DS + + KI+
Sbjct: 128 TSKTSISGGRTQIGFHDGRSL-ISDEKVSVGDSCLVQVPGQKIL 170
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 64.9 bits (151), Expect = 1e-09
Identities = 48/164 (29%), Positives = 75/164 (45%)
Frame = +2
Query: 65 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 244
K + AP+ + + +A G HK +PL+I LR+ LK E+ +I+ L
Sbjct: 6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSL 65
Query: 245 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVRRV 424
+ VDGKV + GFMD +++ + L + YD KG+ I E KL +V+
Sbjct: 66 VMVDGKVVKERRRGIGFMDTLTVSGNDYL--VSYDRKGKLVILPKPGETKGLKLLRVKGK 123
Query: 425 ATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFI 556
+ HDG T+ IK DSV + I +I+D +
Sbjct: 124 TYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLVKIPKKEIVDVL 167
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 44.8 bits (101), Expect = 0.001
Identities = 31/86 (36%), Positives = 40/86 (46%)
Frame = -2
Query: 556 DEVHDLVGGDVELHRVVHLDXXXXXXXXXXXXRHQVRHALGAGRDAPHLAQLVLGFFRCD 377
D + DLV DV+ + V LD + RHAL APHLAQLVL F D
Sbjct: 108 DRIGDLVRRDVDHNGVTLLDHGIRVTNGAAVVQTDARHALVPELLAPHLAQLVLRFDSLD 167
Query: 376 TVDSEPSFHIIY*TE*LICFLNGYNV 299
V +E S ++ E I +G +V
Sbjct: 168 AVHNESSLGVVDEPEVFIALFDGDDV 193
>UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_108,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 246
Score = 40.3 bits (90), Expect = 0.030
Identities = 25/76 (32%), Positives = 42/76 (55%)
Frame = +2
Query: 131 STGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVS 310
+T P +L + + L + ++ K L E L I KQ+ +KV+ K + DPT+P D S
Sbjct: 100 NTQPRELLKVVNLDPKIMDKEKKKL--EEELDINKQQKVKVEHKKQLDPTFPRNDFDKFS 157
Query: 311 IEKTNELFRLIYDVKG 358
IE +++ L+ + KG
Sbjct: 158 IEDMDQVLNLLSNYKG 173
>UniRef50_A5NNX2 Cluster: Putative uncharacterized protein; n=1;
Methylobacterium sp. 4-46|Rep: Putative uncharacterized
protein - Methylobacterium sp. 4-46
Length = 105
Score = 34.7 bits (76), Expect = 1.5
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +1
Query: 412 GAARRDRPQERAVPGDARRAHAPVPG 489
G RRDRPQER P RRA P+ G
Sbjct: 70 GGDRRDRPQERLAPRSLRRAERPLTG 95
>UniRef50_UPI0000F32FE2 Cluster: UPI0000F32FE2 related cluster; n=1;
Bos taurus|Rep: UPI0000F32FE2 UniRef100 entry - Bos
Taurus
Length = 706
Score = 34.3 bits (75), Expect = 2.0
Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Frame = +1
Query: 355 RKVHYPPYHT*RSQVQAVQGAAR-RDRPQERAVPGDARRAHAPVPGP---AHQGER 510
R V PP H + VQG R RP+ R G A RA P PGP H+G R
Sbjct: 140 RTVWMPPCHPASRRGDPVQGLPHPRPRPRSRRA-GPAHRARGPAPGPPPRPHRGTR 194
>UniRef50_A6GEF6 Cluster: Hydrolase, alpha/beta fold family protein;
n=1; Plesiocystis pacifica SIR-1|Rep: Hydrolase,
alpha/beta fold family protein - Plesiocystis pacifica
SIR-1
Length = 310
Score = 33.9 bits (74), Expect = 2.6
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Frame = +2
Query: 89 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 268
W +D LGG+ K+R LP+ +F ++ G V +V + ++ G R
Sbjct: 216 WWVDFLGGLIELGDDAKLRKIRADLPIYVFAGDQDPVGAQGKNVRALVDR--LRATGHAR 273
Query: 269 TDPT-YPAGFMDVVSIEKTNELFRLIYDVKG 358
T YP G ++++ + +++ R + D G
Sbjct: 274 VKQTLYPGGRHEMINERERDQVTRELIDWLG 304
>UniRef50_Q4T5C4 Cluster: Chromosome undetermined SCAF9327, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF9327,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 1541
Score = 33.5 bits (73), Expect = 3.4
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = -3
Query: 519 CTESFTLMSGSGYRSVRPSCVTRYGTLLGPVA--TRRTLHSLYLASSGVIRWIVNLPFTS 346
C+ F +S Y V PS +R GPV+ TR T+ +L + + I+N
Sbjct: 523 CSAEFRTLSSQTYSFVSPS-FSRVHPEKGPVSGGTRLTVTGRHLDAGSSVSCIINKEECL 581
Query: 345 YIKRNNSFVFSMDTTSINPAG 283
++KR N + + S++ +G
Sbjct: 582 FVKRTNREIICITPASLSGSG 602
>UniRef50_Q8S3P7 Cluster: Putative uncharacterized protein 24K23.10;
n=1; Oryza sativa (japonica cultivar-group)|Rep:
Putative uncharacterized protein 24K23.10 - Oryza sativa
subsp. japonica (Rice)
Length = 130
Score = 33.1 bits (72), Expect = 4.5
Identities = 28/89 (31%), Positives = 40/89 (44%)
Frame = -3
Query: 531 EMSSCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSLYLASSGVIRWIVNLPF 352
++S C + F+ G GYR++ S VT G LGPV TRR S G R +P
Sbjct: 4 DVSRC-QGFSNRWGRGYRALAVSTVTARG--LGPVGTRRFSSSTRSPPPGRHRCPSPMPT 60
Query: 351 TSYIKRNNSFVFSMDTTSINPAGYVGSVR 265
+ +N+ + TT+ GS R
Sbjct: 61 SPATTTSNALLGLTTTTAAAALAGAGSGR 89
>UniRef50_UPI0000D9F43D Cluster: PREDICTED: hypothetical protein;
n=3; Eutheria|Rep: PREDICTED: hypothetical protein -
Macaca mulatta
Length = 487
Score = 32.7 bits (71), Expect = 6.0
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 8/39 (20%)
Frame = +1
Query: 412 GAARRDR-----PQER---AVPGDARRAHAPVPGPAHQG 504
G+ARRDR P R + PG ARR H PGPA +G
Sbjct: 270 GSARRDRSSAPGPARRGRDSAPGPARRGHTSAPGPALRG 308
>UniRef50_Q03C76 Cluster: Predicted membrane protein; n=1;
Lactobacillus casei ATCC 334|Rep: Predicted membrane
protein - Lactobacillus casei (strain ATCC 334)
Length = 981
Score = 32.7 bits (71), Expect = 6.0
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -3
Query: 276 GSVRTFPSTLMRRCFTILSTSLPVSAYLSRFRRKITSGKHSRSL 145
GS TFP L + + I+ LP+S + FR ITSG S ++
Sbjct: 891 GSGGTFPMELTNQFYNIIHPFLPMSYSIMNFRNAITSGIASNTV 934
>UniRef50_A5ZHX4 Cluster: Putative uncharacterized protein; n=1;
Bacteroides caccae ATCC 43185|Rep: Putative
uncharacterized protein - Bacteroides caccae ATCC 43185
Length = 189
Score = 32.7 bits (71), Expect = 6.0
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Frame = -3
Query: 411 LHSLYLASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRCF 232
LH LYLA + W IK F+ TS+ Y + +P L R
Sbjct: 110 LHDLYLADIHIANWGRKFAERECIKSEQLFISRQFKTSLE--RYQDLIADYPDILQRVPL 167
Query: 231 TILSTSLPVS-AYLSRFRRKI 172
I+++ L +S LSR R KI
Sbjct: 168 GIIASYLGISQVSLSRIRAKI 188
>UniRef50_A0VDJ9 Cluster: PE-PGRS family protein; n=1; Delftia
acidovorans SPH-1|Rep: PE-PGRS family protein - Delftia
acidovorans SPH-1
Length = 201
Score = 32.7 bits (71), Expect = 6.0
Identities = 22/41 (53%), Positives = 25/41 (60%)
Frame = +1
Query: 418 ARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAARHLHQQ 540
A+R R Q RA P AR P PGP H+G R GAA LH+Q
Sbjct: 45 AQRARRQ-RAHPPPARAG--PGPGPGHRG-RAGAAAALHRQ 81
>UniRef50_A0A7M3 Cluster: Putative uncharacterized protein; n=1;
Cyanophage Ma-LMM01|Rep: Putative uncharacterized
protein - Cyanophage Ma-LMM01
Length = 840
Score = 32.7 bits (71), Expect = 6.0
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Frame = +2
Query: 386 EEAKYKLCKVRRVATGPKSVP---YLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIM 547
EE Y++ + TG +V Y + +DGR++ +P+P++ + L IS N+I+
Sbjct: 66 EEGWYRINPAQLTITGNTNVTLRIYRIDYDGRSILFPEPVVGQDGYPFLQISGNQIL 122
>UniRef50_Q0U2Z5 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 654
Score = 32.7 bits (71), Expect = 6.0
Identities = 27/93 (29%), Positives = 41/93 (44%)
Frame = -3
Query: 339 KRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRCFTILSTSLPVSAYLSRFRRKITSGK 160
+R++ V S +T+ +P G + S P+ +R F LS S + ++T GK
Sbjct: 286 RRHDYDVQSTETSLSSPRGLLKSPIPPPTVTVRSEFPTLSRSRQQQSLTCLITVEVTEGK 345
Query: 159 HSRSLWGPVEGRGAYTPPSLSNIHALGAFKRFK 61
P + RG PP S A G+F R K
Sbjct: 346 WRAD---PEDMRGVAPPPVPSIASATGSFSRGK 375
>UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1;
Acanthamoeba polyphaga mimivirus|Rep: Cysteinyl-tRNA
synthetase - Mimivirus
Length = 509
Score = 32.7 bits (71), Expect = 6.0
Identities = 14/54 (25%), Positives = 32/54 (59%)
Frame = +2
Query: 92 MLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKV 253
+LDKLG +Y S+ HK+++ + ++I R++L+ ++ +K++L +
Sbjct: 421 LLDKLGFIYRVGNSSSSHKIKDLMNILIETRSQLRQLTRNPDLSPGIKKQLFDI 474
>UniRef50_UPI0000E212EB Cluster: PREDICTED: hypothetical protein;
n=1; Pan troglodytes|Rep: PREDICTED: hypothetical
protein - Pan troglodytes
Length = 301
Score = 32.3 bits (70), Expect = 7.9
Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +1
Query: 415 AARRDRPQERAV--PGDARRAHAPVPGPAHQGERLGAAR 525
AA R+RP+ER PGDAR A P P P G AR
Sbjct: 22 AAPRERPRERLGLDPGDARAAELPAPVPPPPCPPAGRAR 60
>UniRef50_Q9AAE0 Cluster: ISCc2, transposase, fusion; n=1;
Caulobacter vibrioides|Rep: ISCc2, transposase, fusion -
Caulobacter crescentus (Caulobacter vibrioides)
Length = 841
Score = 32.3 bits (70), Expect = 7.9
Identities = 21/54 (38%), Positives = 24/54 (44%)
Frame = +1
Query: 394 QVQAVQGAARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAARHLHQQDHGLH 555
Q A QGA R Q+R V ARRA A V GE++ R H D H
Sbjct: 600 QASAAQGAIARQHAQQRLV---ARRADAKVDHAGRGGEQVVLRRQAHAHDIAGH 650
>UniRef50_Q3W7E3 Cluster: Putative uncharacterized protein; n=1;
Frankia sp. EAN1pec|Rep: Putative uncharacterized
protein - Frankia sp. EAN1pec
Length = 344
Score = 32.3 bits (70), Expect = 7.9
Identities = 16/40 (40%), Positives = 18/40 (45%)
Frame = +1
Query: 415 AARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAARHLH 534
AAR Q RA PGD R + PGP G A +H
Sbjct: 18 AARDGHRQARATPGDHRSSSGSAPGPIRTGRERHYAEGVH 57
>UniRef50_Q1NH40 Cluster: TonB-dependent receptor; n=1; Sphingomonas
sp. SKA58|Rep: TonB-dependent receptor - Sphingomonas
sp. SKA58
Length = 810
Score = 32.3 bits (70), Expect = 7.9
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Frame = -3
Query: 456 TRYGTLLGPVATRRTLHSLYLASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGYV 277
T +G L P T + Y + S + VN T ++ F ++ D SIN GY+
Sbjct: 415 TDFGFNLAPANTNL---ATYKSESKALFAQVNYSLTERLRVTGGFRYTWDKRSINRMGYI 471
Query: 276 GSVRTFPSTLMR--RCFTILSTSL 211
G + F + + R T+ +T L
Sbjct: 472 GGIPGFSGSFVSNGRLITLPATGL 495
>UniRef50_Q095T8 Cluster: Radical SAM:Molybdenum cofactor synthesis
C-terminal; n=1; Stigmatella aurantiaca DW4/3-1|Rep:
Radical SAM:Molybdenum cofactor synthesis C-terminal -
Stigmatella aurantiaca DW4/3-1
Length = 362
Score = 32.3 bits (70), Expect = 7.9
Identities = 21/50 (42%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +1
Query: 412 GAARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAARHLHQQD--HGLH 555
G AR R +RA PG A G AH GE LGA L + GLH
Sbjct: 209 GRARSHRRADRAAPGLRPAAGGGARGGAHPGEHLGACALLARAGGARGLH 258
>UniRef50_Q381Q5 Cluster: Putative uncharacterized protein; n=1;
Trypanosoma brucei|Rep: Putative uncharacterized protein
- Trypanosoma brucei
Length = 347
Score = 32.3 bits (70), Expect = 7.9
Identities = 21/71 (29%), Positives = 30/71 (42%)
Frame = -3
Query: 438 LGPVATRRTLHSLYLASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTF 259
LG V L+ Y+ I LP + ++ N FV ++ S PAG G V
Sbjct: 166 LGVVMEECNLYGAYIPGHPHALLIAYLPHSPWVLLRNLFVSNLTKISECPAGGEGGVNKV 225
Query: 258 PSTLMRRCFTI 226
S ++RR I
Sbjct: 226 DSLVLRRTLVI 236
>UniRef50_Q05223 Cluster: Major head protein Gp17; n=5;
Siphoviridae|Rep: Major head protein Gp17 -
Mycobacteriophage L5
Length = 326
Score = 32.3 bits (70), Expect = 7.9
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = -3
Query: 324 FVFSMDTTSINPAGYVGSVRTFPSTLMRRCF---TILSTSLPVSAYLSRFRRKIT 169
FV S +T NPA Y+G++RT +T F I T P +L++ ++++
Sbjct: 104 FVASAETVRANPANYLGTMRTKVATAFAMAFDNAAINGTDSPFPTFLAQTTKEVS 158
>UniRef50_Q59046 Cluster: DNA topoisomerase 1; n=6;
Methanococcales|Rep: DNA topoisomerase 1 - Methanococcus
jannaschii
Length = 761
Score = 32.3 bits (70), Expect = 7.9
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = +2
Query: 128 PSTGPHKLRECLPLVIFLRNRLK-YALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDV 304
P T KL + + + N +K + + G +I+K+ L V+GK + DP +PA +
Sbjct: 316 PRTSSQKLPKDRKYLEDILNIIKNHPVYGKWAERILKENLKPVEGK-KEDPAHPAIHIVD 374
Query: 305 VSIEKTNELFRLIYDVKGRFTI 370
+ E+ +E + IYD+ R T+
Sbjct: 375 IPKEELSEKEKEIYDLIARRTL 396
>UniRef50_Q95108 Cluster: Thioredoxin, mitochondrial precursor;
n=10; Euteleostomi|Rep: Thioredoxin, mitochondrial
precursor - Bos taurus (Bovine)
Length = 166
Score = 32.3 bits (70), Expect = 7.9
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -3
Query: 195 LSRFRRKITSGKHSRSLWGPVEGRGAYTP 109
L RF I SGK S+S W PV R TP
Sbjct: 7 LRRFLTSIISGKPSQSRWAPVASRALQTP 35
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 570,027,548
Number of Sequences: 1657284
Number of extensions: 12044051
Number of successful extensions: 41884
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 40091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41848
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37071859483
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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