Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_B02
         (557 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             303   4e-83
SB_33538| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_54032| Best HMM Match : Peptidase_A17 (HMM E-Value=5.20022e-42)     28   5.9  
SB_52973| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_10756| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)      27   7.9  
SB_21351| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  303 bits (745), Expect = 4e-83
 Identities = 141/182 (77%), Positives = 158/182 (86%), Gaps = 1/182 (0%)
 Frame = +2

Query: 14  FLFKVLFN-MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNR 190
           FLF +L   MARGPKKH+KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNR
Sbjct: 416 FLFSLLAAIMARGPKKHMKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNR 475

Query: 191 LKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTI 370
           LKYAL G EV KIVKQRLIK+DGKVRTD TYPAGFMDVV+I+KT E FRL+YDVKGRF +
Sbjct: 476 LKYALNGEEVKKIVKQRLIKIDGKVRTDTTYPAGFMDVVTIDKTGENFRLLYDVKGRFAV 535

Query: 371 HRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMD 550
           HRIT EEAKYKL +VRRV  G K VPY+VTHD RT+RYPDP IKVND+V +DI T K++D
Sbjct: 536 HRITAEEAKYKLGRVRRVDVGAKGVPYIVTHDARTIRYPDPNIKVNDTVVIDIKTGKVID 595

Query: 551 FI 556
           +I
Sbjct: 596 YI 597


>SB_33538| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = -3

Query: 360 LPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRCFTILSTSLPVSAYLSRF 184
           + F   ++  NS  FS       P G+   + +FPS + +    ILS    +S ++S+F
Sbjct: 23  MSFAEVMRLVNSMDFSTVIFDTAPTGHTLRLLSFPSVIEKSLGKILSLKNSISPFISQF 81


>SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1776

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/56 (19%), Positives = 28/56 (50%)
 Frame = +2

Query: 194 KYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGR 361
           +Y L  ++   + +  L++  G +   P+YP+  ++  ++  +N+LF    +   R
Sbjct: 596 EYWLMASQGQHVSESTLVRGRGDILISPSYPSALLETTTLITSNQLFNTFIESSTR 651


>SB_54032| Best HMM Match : Peptidase_A17 (HMM E-Value=5.20022e-42)
          Length = 832

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 246 MRRCFTILSTSLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAY 115
           +R C+  LS+S   S   S+FR +   GKH  ++    +G+G +
Sbjct: 100 LRLCYNCLSSSHISSKCTSKFRCRQCGGKHHTTICERDKGQGPH 143


>SB_52973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 973

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 376 YHT*RSQVQAVQGAARRDRPQERAVPGDARR 468
           Y+  ++ ++A  G A + + QERA+PGD R+
Sbjct: 662 YYALKAAIRARHGLAPQKK-QERAIPGDTRK 691


>SB_10756| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 713

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 316 LNGYNVHKSRRVRGVSPHFPVHFDET 239
           L+G+    +RRVR  +P FP H D T
Sbjct: 295 LSGFRTLGARRVRIATPSFPHHRDRT 320


>SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)
          Length = 482

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
 Frame = +2

Query: 368 IHRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGR-------TLRY-PDPLIKVNDSV 517
           I  +TP+    K C+V R++TGP    +++  +G        TLR  P P I+V  SV
Sbjct: 287 IRMVTPQGTVEKSCQVPRMSTGPDLHHFIMGSEGTLGVITEVTLRIRPVPEIRVYGSV 344


>SB_21351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 558

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 246 MRRCFTILSTSLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAY 115
           +R C+  LS+S   S   S+FR +   GKH  ++    +G+G +
Sbjct: 413 LRLCYNCLSSSHISSKCTSKFRCRQCRGKHHTTICERDKGQGPH 456


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,826,991
Number of Sequences: 59808
Number of extensions: 397776
Number of successful extensions: 1244
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1244
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)