Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_B01
         (99 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    29   0.11 
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    27   0.44 
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    27   0.44 
SPAC1952.07 |rad1||checkpoint clamp complex protein Rad1|Schizos...    24   2.3  
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    24   3.1  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    22   9.4  
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    22   9.4  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    22   9.4  

>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 28.7 bits (61), Expect = 0.11
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 13  SDVVDLTPSKFDRLVTNSDEVWIVEFY 93
           SDVV+L+ S    L+  SD  WI+ F+
Sbjct: 438 SDVVNLSVSTVFNLLCGSDTTWIINFF 464


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 26.6 bits (56), Expect = 0.44
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 13  SDVVDLTPSKFDRLVTNSDEVWIVEFYA 96
           S+VV+L    FD++V +  +  +VEFYA
Sbjct: 140 SNVVELDSLNFDKVVMDDKKDVLVEFYA 167


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 26.6 bits (56), Expect = 0.44
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 16  DVVDLTPSKFDRLVTNSDEVWIVEFYAP 99
           D+V L    FD +V +  +  +VEFYAP
Sbjct: 356 DLVVLVADNFDDIVMDETKDVLVEFYAP 383


>SPAC1952.07 |rad1||checkpoint clamp complex protein
           Rad1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 323

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 89  NSTIHTSSEFVTSLSNLLGVKSTTSEE 9
           N  IHTSS+  T L   +G  STT  E
Sbjct: 182 NLIIHTSSQKSTFLLRCVGALSTTEIE 208


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 89  NSTIHTSSEFVTSLSNLLGVKSTTSEEP 6
           NS    +   VTSL++ LGVK T   +P
Sbjct: 437 NSLYMNADAVVTSLASRLGVKKTDILDP 464


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 97  ARRILQSTPHPNL 59
           A R+LQSTPH  L
Sbjct: 127 ATRLLQSTPHRQL 139


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 28  LTPSKFDRLVTNSDEVWI 81
           L P K ++L+  S +VW+
Sbjct: 884 LPPEKIEKLIICSGQVWV 901


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = -2

Query: 86  STIHTSSEFVTSLSNLLGV--KSTTS 15
           S + + SEF  SLSNL+ V  K+T S
Sbjct: 241 SKVLSDSEFYKSLSNLVNVWLKTTRS 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 384,569
Number of Sequences: 5004
Number of extensions: 3249
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 2,362,478
effective HSP length: 14
effective length of database: 2,292,422
effective search space used: 41263596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)