Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_B01
         (99 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0345 + 16876489-16876614,16876718-16876876,16877989-168781...    38   8e-04
05_01_0410 - 3234455-3234466,3234851-3234950,3235037-3235161,323...    32   0.072
01_03_0161 + 13337265-13337297,13337880-13338017,13338211-133383...    31   0.17 
08_01_0509 + 4433837-4434437,4434564-4434636,4435408-4437367,443...    26   3.6  
04_01_0567 - 7263744-7263922,7264020-7264259,7264919-7264982,726...    25   6.3  

>09_04_0345 +
           16876489-16876614,16876718-16876876,16877989-16878102,
           16878701-16878882,16879142-16879241,16879597-16879638,
           16879818-16879994,16880084-16880175,16880633-16880779,
           16880832-16881036
          Length = 447

 Score = 38.3 bits (85), Expect = 8e-04
 Identities = 14/26 (53%), Positives = 20/26 (76%)
 Frame = +1

Query: 22  VDLTPSKFDRLVTNSDEVWIVEFYAP 99
           ++L    FD+LVT S ++WIVEF+AP
Sbjct: 168 IELNSQNFDKLVTKSKDLWIVEFFAP 193



 Score = 29.1 bits (62), Expect = 0.51
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 13  SDVVDLTPSKFDRLVTNSDEVWIVEFYAP 99
           S V+   P+ F   V NS+ V +VEF+AP
Sbjct: 29  SPVLQFNPNNFKSKVLNSNGVVLVEFFAP 57


>05_01_0410 -
           3234455-3234466,3234851-3234950,3235037-3235161,
           3235244-3235400,3235644-3235735,3235828-3235855,
           3235949-3236066,3236411-3236466,3236556-3236653,
           3236864-3236948,3237428-3237600
          Length = 347

 Score = 31.9 bits (69), Expect = 0.072
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +1

Query: 13  SDVVDLTPSKFDRLVTNSDEVWIVEFYAP 99
           S VV LTP  FD +V +  +  +VEFYAP
Sbjct: 148 SSVVVLTPETFDSVVLDETKDVLVEFYAP 176


>01_03_0161 +
           13337265-13337297,13337880-13338017,13338211-13338308,
           13338395-13338450,13338664-13338781,13338889-13338916,
           13339021-13339112,13339321-13339477,13339569-13339693,
           13339785-13339884,13339991-13340059
          Length = 337

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +1

Query: 13  SDVVDLTPSKFDRLVTNSDEVWIVEFYAP 99
           S VV L P  FD +V + ++  +VEFYAP
Sbjct: 119 SSVVVLGPDNFDSIVLDENKDILVEFYAP 147


>08_01_0509 +
           4433837-4434437,4434564-4434636,4435408-4437367,
           4437721-4437990,4438168-4438605,4438772-4439043,
           4439126-4439274,4439339-4439470,4439554-4439880,
           4439963-4440357,4440551-4440861,4441304-4441394,
           4441806-4441847
          Length = 1686

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 99  RRVEFYNPHLIRICD 55
           R  E YNPHL ++CD
Sbjct: 296 RSRELYNPHLEKVCD 310


>04_01_0567 - 7263744-7263922,7264020-7264259,7264919-7264982,
            7265088-7265393,7265652-7265866,7266195-7266489,
            7266596-7266655,7267091-7267717,7268510-7268596,
            7269292-7269612,7270051-7270224,7272806-7275022
          Length = 1594

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 16   DVVDLTPSKFDRLVTNSDEVWIV 84
            DVV   P K D LV +S E W V
Sbjct: 1443 DVVASKPQKLDALVADSGENWSV 1465


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,310,645
Number of Sequences: 37544
Number of extensions: 18136
Number of successful extensions: 57
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 14,793,348
effective HSP length: 14
effective length of database: 14,267,732
effective search space used: 256819176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)